merge from 2_4_Release branch
[jalview.git] / src / ext / vamsas / SeqSearchServiceSoapBindingStub.java
index 614a85f..11e307b 100644 (file)
-/**\r
- * ScanPSServiceSoapBindingStub.java\r
- *\r
- * This file was auto-generated from WSDL\r
- * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.\r
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * \r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ * \r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  */\r
-\r
 package ext.vamsas;\r
 \r
-public class SeqSearchServiceSoapBindingStub extends org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI {\r
-    private java.util.Vector cachedSerClasses = new java.util.Vector();\r
-    private java.util.Vector cachedSerQNames = new java.util.Vector();\r
-    private java.util.Vector cachedSerFactories = new java.util.Vector();\r
-    private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
-\r
-    static org.apache.axis.description.OperationDesc [] _operations;\r
-\r
-    static {\r
-        _operations = new org.apache.axis.description.OperationDesc[5];\r
-        _initOperationDesc1();\r
-    }
-\r
-    private static void _initOperationDesc1(){\r
-        org.apache.axis.description.OperationDesc oper;\r
-        oper = new org.apache.axis.description.OperationDesc();\r
-        oper.setName("getDatabase");\r
-        oper.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));\r
-        oper.setReturnClass(java.lang.String.class);\r
-        oper.setReturnQName(new javax.xml.namespace.QName("", "getDatabaseReturn"));\r
-        oper.setStyle(org.apache.axis.constants.Style.RPC);\r
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
-        _operations[0] = oper;\r
-\r
-        oper = new org.apache.axis.description.OperationDesc();\r
-        oper.setName("getResult");\r
-        oper.addParameter(new javax.xml.namespace.QName("", "job_id"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "SeqSearchResult"));\r
-        oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);\r
-        oper.setReturnQName(new javax.xml.namespace.QName("", "getResultReturn"));\r
-        oper.setStyle(org.apache.axis.constants.Style.RPC);\r
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
-        _operations[1] = oper;\r
-\r
-        oper = new org.apache.axis.description.OperationDesc();\r
-        oper.setName("psearch");\r
-        oper.addParameter(new javax.xml.namespace.QName("", "al"), new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment"), vamsas.objects.simple.Alignment.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
-        oper.addParameter(new javax.xml.namespace.QName("", "database"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));\r
-        oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
-        oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));\r
-        oper.setStyle(org.apache.axis.constants.Style.RPC);\r
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
-        _operations[2] = oper;\r
-\r
-        oper = new org.apache.axis.description.OperationDesc();\r
-        oper.setName("search");\r
-        oper.addParameter(new javax.xml.namespace.QName("", "s"), new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence"), vamsas.objects.simple.Sequence.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
-        oper.addParameter(new javax.xml.namespace.QName("", "database"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));\r
-        oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
-        oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));\r
-        oper.setStyle(org.apache.axis.constants.Style.RPC);\r
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
-        _operations[3] = oper;\r
-\r
-        oper = new org.apache.axis.description.OperationDesc();\r
-        oper.setName("cancel");\r
-        oper.addParameter(new javax.xml.namespace.QName("", "jobId"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, org.apache.axis.description.ParameterDesc.IN, false, false);\r
-        oper.setReturnType(new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId"));\r
-        oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
-        oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));\r
-        oper.setStyle(org.apache.axis.constants.Style.RPC);\r
-        oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
-        _operations[4] = oper;\r
-\r
+public class SeqSearchServiceSoapBindingStub extends\r
+        org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI\r
+{\r
+  private java.util.Vector cachedSerClasses = new java.util.Vector();\r
+\r
+  private java.util.Vector cachedSerQNames = new java.util.Vector();\r
+\r
+  private java.util.Vector cachedSerFactories = new java.util.Vector();\r
+\r
+  private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
+\r
+  static org.apache.axis.description.OperationDesc[] _operations;\r
+\r
+  static\r
+  {\r
+    _operations = new org.apache.axis.description.OperationDesc[5];\r
+    _initOperationDesc1();\r
+  }\r
+\r
+  private static void _initOperationDesc1()\r
+  {\r
+    org.apache.axis.description.OperationDesc oper;\r
+    oper = new org.apache.axis.description.OperationDesc();\r
+    oper.setName("getDatabase");\r
+    oper.setReturnType(new javax.xml.namespace.QName(\r
+            "http://www.w3.org/2001/XMLSchema", "string"));\r
+    oper.setReturnClass(java.lang.String.class);\r
+    oper.setReturnQName(new javax.xml.namespace.QName("",\r
+            "getDatabaseReturn"));\r
+    oper.setStyle(org.apache.axis.constants.Style.RPC);\r
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
+    _operations[0] = oper;\r
+\r
+    oper = new org.apache.axis.description.OperationDesc();\r
+    oper.setName("getResult");\r
+    oper.addParameter(new javax.xml.namespace.QName("", "job_id"),\r
+            new javax.xml.namespace.QName(\r
+                    "http://www.w3.org/2001/XMLSchema", "string"),\r
+            java.lang.String.class,\r
+            org.apache.axis.description.ParameterDesc.IN, false, false);\r
+    oper.setReturnType(new javax.xml.namespace.QName(\r
+            "simple.objects.vamsas", "SeqSearchResult"));\r
+    oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);\r
+    oper\r
+            .setReturnQName(new javax.xml.namespace.QName("",\r
+                    "getResultReturn"));\r
+    oper.setStyle(org.apache.axis.constants.Style.RPC);\r
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
+    _operations[1] = oper;\r
+\r
+    oper = new org.apache.axis.description.OperationDesc();\r
+    oper.setName("psearch");\r
+    oper.addParameter(new javax.xml.namespace.QName("", "al"),\r
+            new javax.xml.namespace.QName("simple.objects.vamsas",\r
+                    "Alignment"), vamsas.objects.simple.Alignment.class,\r
+            org.apache.axis.description.ParameterDesc.IN, false, false);\r
+    oper.addParameter(new javax.xml.namespace.QName("", "database"),\r
+            new javax.xml.namespace.QName(\r
+                    "http://www.w3.org/2001/XMLSchema", "string"),\r
+            java.lang.String.class,\r
+            org.apache.axis.description.ParameterDesc.IN, false, false);\r
+    oper.setReturnType(new javax.xml.namespace.QName(\r
+            "simple.objects.vamsas", "WsJobId"));\r
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
+    oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));\r
+    oper.setStyle(org.apache.axis.constants.Style.RPC);\r
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
+    _operations[2] = oper;\r
+\r
+    oper = new org.apache.axis.description.OperationDesc();\r
+    oper.setName("search");\r
+    oper.addParameter(new javax.xml.namespace.QName("", "s"),\r
+            new javax.xml.namespace.QName("simple.objects.vamsas",\r
+                    "Sequence"), vamsas.objects.simple.Sequence.class,\r
+            org.apache.axis.description.ParameterDesc.IN, false, false);\r
+    oper.addParameter(new javax.xml.namespace.QName("", "database"),\r
+            new javax.xml.namespace.QName(\r
+                    "http://www.w3.org/2001/XMLSchema", "string"),\r
+            java.lang.String.class,\r
+            org.apache.axis.description.ParameterDesc.IN, false, false);\r
+    oper.setReturnType(new javax.xml.namespace.QName(\r
+            "simple.objects.vamsas", "WsJobId"));\r
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
+    oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));\r
+    oper.setStyle(org.apache.axis.constants.Style.RPC);\r
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
+    _operations[3] = oper;\r
+\r
+    oper = new org.apache.axis.description.OperationDesc();\r
+    oper.setName("cancel");\r
+    oper.addParameter(new javax.xml.namespace.QName("", "jobId"),\r
+            new javax.xml.namespace.QName(\r
+                    "http://www.w3.org/2001/XMLSchema", "string"),\r
+            java.lang.String.class,\r
+            org.apache.axis.description.ParameterDesc.IN, false, false);\r
+    oper.setReturnType(new javax.xml.namespace.QName(\r
+            "simple.objects.vamsas", "WsJobId"));\r
+    oper.setReturnClass(vamsas.objects.simple.WsJobId.class);\r
+    oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));\r
+    oper.setStyle(org.apache.axis.constants.Style.RPC);\r
+    oper.setUse(org.apache.axis.constants.Use.ENCODED);\r
+    _operations[4] = oper;\r
+\r
+  }\r
+\r
+  public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault\r
+  {\r
+    this(null);\r
+  }\r
+\r
+  public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,\r
+          javax.xml.rpc.Service service) throws org.apache.axis.AxisFault\r
+  {\r
+    this(service);\r
+    super.cachedEndpoint = endpointURL;\r
+  }\r
+\r
+  public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)\r
+          throws org.apache.axis.AxisFault\r
+  {\r
+    if (service == null)\r
+    {\r
+      super.service = new org.apache.axis.client.Service();\r
     }\r
-\r
-    public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault {\r
-         this(null);\r
-    }\r
-\r
-    public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {\r
-         this(service);\r
-         super.cachedEndpoint = endpointURL;\r
+    else\r
+    {\r
+      super.service = service;\r
     }\r
-\r
-    public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {\r
-        if (service == null) {\r
-            super.service = new org.apache.axis.client.Service();\r
-        } else {\r
-            super.service = service;\r
+    java.lang.Class cls;\r
+    javax.xml.namespace.QName qName;\r
+    java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
+    java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
+    java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
+    java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
+    java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
+    java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
+    java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
+    java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
+    java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
+    java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.Result.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
+            "WsJobId");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.WsJobId.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+    qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",\r
+            "Object");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.Object.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");\r
+    cachedSerQNames.add(qName);\r
+    cls = java.lang.String[].class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(arraysf);\r
+    cachedDeserFactories.add(arraydf);\r
+\r
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
+            "Alignment");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.Alignment.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
+            "Sequence");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.Sequence.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+    qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.Sequence[].class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(arraysf);\r
+    cachedDeserFactories.add(arraydf);\r
+\r
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
+            "SeqSearchResult");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.SeqSearchResult.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+    qName = new javax.xml.namespace.QName("simple.objects.vamsas",\r
+            "SequenceSet");\r
+    cachedSerQNames.add(qName);\r
+    cls = vamsas.objects.simple.SequenceSet.class;\r
+    cachedSerClasses.add(cls);\r
+    cachedSerFactories.add(beansf);\r
+    cachedDeserFactories.add(beandf);\r
+\r
+  }\r
+\r
+  protected org.apache.axis.client.Call createCall()\r
+          throws java.rmi.RemoteException\r
+  {\r
+    try\r
+    {\r
+      org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service\r
+              .createCall();\r
+      if (super.maintainSessionSet)\r
+      {\r
+        _call.setMaintainSession(super.maintainSession);\r
+      }\r
+      if (super.cachedUsername != null)\r
+      {\r
+        _call.setUsername(super.cachedUsername);\r
+      }\r
+      if (super.cachedPassword != null)\r
+      {\r
+        _call.setPassword(super.cachedPassword);\r
+      }\r
+      if (super.cachedEndpoint != null)\r
+      {\r
+        _call.setTargetEndpointAddress(super.cachedEndpoint);\r
+      }\r
+      if (super.cachedTimeout != null)\r
+      {\r
+        _call.setTimeout(super.cachedTimeout);\r
+      }\r
+      if (super.cachedPortName != null)\r
+      {\r
+        _call.setPortName(super.cachedPortName);\r
+      }\r
+      java.util.Enumeration keys = super.cachedProperties.keys();\r
+      while (keys.hasMoreElements())\r
+      {\r
+        java.lang.String key = (java.lang.String) keys.nextElement();\r
+        _call.setProperty(key, super.cachedProperties.get(key));\r
+      }\r
+      // All the type mapping information is registered\r
+      // when the first call is made.\r
+      // The type mapping information is actually registered in\r
+      // the TypeMappingRegistry of the service, which\r
+      // is the reason why registration is only needed for the first call.\r
+      synchronized (this)\r
+      {\r
+        if (firstCall())\r
+        {\r
+          // must set encoding style before registering serializers\r
+          _call\r
+                  .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
+          _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);\r
+          for (int i = 0; i < cachedSerFactories.size(); ++i)\r
+          {\r
+            java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
+            javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames\r
+                    .get(i);\r
+            java.lang.Class sf = (java.lang.Class) cachedSerFactories\r
+                    .get(i);\r
+            java.lang.Class df = (java.lang.Class) cachedDeserFactories\r
+                    .get(i);\r
+            _call.registerTypeMapping(cls, qName, sf, df, false);\r
+          }\r
         }\r
-            java.lang.Class cls;\r
-            javax.xml.namespace.QName qName;\r
-            java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
-            java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
-            java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
-            java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
-            java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
-            java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
-            java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
-            java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
-            java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
-            java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.Result.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "WsJobId");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.WsJobId.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
-            qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", "Object");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.Object.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
-            qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");\r
-            cachedSerQNames.add(qName);\r
-            cls = java.lang.String[].class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(arraysf);\r
-            cachedDeserFactories.add(arraydf);\r
-\r
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Alignment");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.Alignment.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Sequence");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.Sequence.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
-            qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_tns1_Sequence");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.Sequence[].class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(arraysf);\r
-            cachedDeserFactories.add(arraydf);\r
-\r
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SeqSearchResult");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.SeqSearchResult.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
-            qName = new javax.xml.namespace.QName("simple.objects.vamsas", "SequenceSet");\r
-            cachedSerQNames.add(qName);\r
-            cls = vamsas.objects.simple.SequenceSet.class;\r
-            cachedSerClasses.add(cls);\r
-            cachedSerFactories.add(beansf);\r
-            cachedDeserFactories.add(beandf);\r
-\r
+      }\r
+      return _call;\r
+    } catch (java.lang.Throwable _t)\r
+    {\r
+      throw new org.apache.axis.AxisFault(\r
+              "Failure trying to get the Call object", _t);\r
     }\r
+  }\r
 \r
-    protected org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {\r
-        try {\r
-            org.apache.axis.client.Call _call =\r
-                    (org.apache.axis.client.Call) super.service.createCall();\r
-            if (super.maintainSessionSet) {\r
-                _call.setMaintainSession(super.maintainSession);\r
-            }\r
-            if (super.cachedUsername != null) {\r
-                _call.setUsername(super.cachedUsername);\r
-            }\r
-            if (super.cachedPassword != null) {\r
-                _call.setPassword(super.cachedPassword);\r
-            }\r
-            if (super.cachedEndpoint != null) {\r
-                _call.setTargetEndpointAddress(super.cachedEndpoint);\r
-            }\r
-            if (super.cachedTimeout != null) {\r
-                _call.setTimeout(super.cachedTimeout);\r
-            }\r
-            if (super.cachedPortName != null) {\r
-                _call.setPortName(super.cachedPortName);\r
-            }\r
-            java.util.Enumeration keys = super.cachedProperties.keys();\r
-            while (keys.hasMoreElements()) {\r
-                java.lang.String key = (java.lang.String) keys.nextElement();\r
-                _call.setProperty(key, super.cachedProperties.get(key));\r
-            }\r
-            // All the type mapping information is registered\r
-            // when the first call is made.\r
-            // The type mapping information is actually registered in\r
-            // the TypeMappingRegistry of the service, which\r
-            // is the reason why registration is only needed for the first call.\r
-            synchronized (this) {\r
-                if (firstCall()) {\r
-                    // must set encoding style before registering serializers\r
-                    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
-                    _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);\r
-                    for (int i = 0; i < cachedSerFactories.size(); ++i) {\r
-                        java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
-                        javax.xml.namespace.QName qName =\r
-                                (javax.xml.namespace.QName) cachedSerQNames.get(i);\r
-                        java.lang.Class sf = (java.lang.Class)\r
-                                 cachedSerFactories.get(i);\r
-                        java.lang.Class df = (java.lang.Class)\r
-                                 cachedDeserFactories.get(i);\r
-                        _call.registerTypeMapping(cls, qName, sf, df, false);\r
-                    }\r
-                }\r
-            }\r
-            return _call;\r
-        }\r
-        catch (java.lang.Throwable _t) {\r
-            throw new org.apache.axis.AxisFault("Failure trying to get the Call object", _t);\r
-        }\r
+  public java.lang.String getDatabase() throws java.rmi.RemoteException\r
+  {\r
+    if (super.cachedEndpoint == null)\r
+    {\r
+      throw new org.apache.axis.NoEndPointException();\r
     }\r
-\r
-    public java.lang.String getDatabase() throws java.rmi.RemoteException {\r
-        if (super.cachedEndpoint == null) {\r
-            throw new org.apache.axis.NoEndPointException();\r
-        }\r
-        org.apache.axis.client.Call _call = createCall();\r
-        _call.setOperation(_operations[0]);\r
-        _call.setUseSOAPAction(true);\r
-        _call.setSOAPActionURI("");\r
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getDatabase"));\r
-\r
-        setRequestHeaders(_call);\r
-        setAttachments(_call);\r
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});\r
-\r
-        if (_resp instanceof java.rmi.RemoteException) {\r
-            throw (java.rmi.RemoteException)_resp;\r
-        }\r
-        else {\r
-            extractAttachments(_call);\r
-            try {\r
-                return (java.lang.String) _resp;\r
-            } catch (java.lang.Exception _exception) {\r
-                return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);\r
-            }\r
-        }\r
+    org.apache.axis.client.Call _call = createCall();\r
+    _call.setOperation(_operations[0]);\r
+    _call.setUseSOAPAction(true);\r
+    _call.setSOAPActionURI("");\r
+    _call\r
+            .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
+            "getDatabase"));\r
+\r
+    setRequestHeaders(_call);\r
+    setAttachments(_call);\r
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
+    {});\r
+\r
+    if (_resp instanceof java.rmi.RemoteException)\r
+    {\r
+      throw (java.rmi.RemoteException) _resp;\r
     }\r
-\r
-    public vamsas.objects.simple.SeqSearchResult getResult(java.lang.String job_id) throws java.rmi.RemoteException {\r
-        if (super.cachedEndpoint == null) {\r
-            throw new org.apache.axis.NoEndPointException();\r
-        }\r
-        org.apache.axis.client.Call _call = createCall();\r
-        _call.setOperation(_operations[1]);\r
-        _call.setUseSOAPAction(true);\r
-        _call.setSOAPActionURI("");\r
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "getResult"));\r
-\r
-        setRequestHeaders(_call);\r
-        setAttachments(_call);\r
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {job_id});\r
-\r
-        if (_resp instanceof java.rmi.RemoteException) {\r
-            throw (java.rmi.RemoteException)_resp;\r
-        }\r
-        else {\r
-            extractAttachments(_call);\r
-            try {\r
-                return (vamsas.objects.simple.SeqSearchResult) _resp;\r
-            } catch (java.lang.Exception _exception) {\r
-                return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.SeqSearchResult.class);\r
-            }\r
-        }\r
+    else\r
+    {\r
+      extractAttachments(_call);\r
+      try\r
+      {\r
+        return (java.lang.String) _resp;\r
+      } catch (java.lang.Exception _exception)\r
+      {\r
+        return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(\r
+                _resp, java.lang.String.class);\r
+      }\r
     }\r
-\r
-    public vamsas.objects.simple.WsJobId psearch(vamsas.objects.simple.Alignment al, java.lang.String database) throws java.rmi.RemoteException {\r
-        if (super.cachedEndpoint == null) {\r
-            throw new org.apache.axis.NoEndPointException();\r
-        }\r
-        org.apache.axis.client.Call _call = createCall();\r
-        _call.setOperation(_operations[2]);\r
-        _call.setUseSOAPAction(true);\r
-        _call.setSOAPActionURI("");\r
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "psearch"));\r
-\r
-        setRequestHeaders(_call);\r
-        setAttachments(_call);\r
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {al, database});\r
-\r
-        if (_resp instanceof java.rmi.RemoteException) {\r
-            throw (java.rmi.RemoteException)_resp;\r
-        }\r
-        else {\r
-            extractAttachments(_call);\r
-            try {\r
-                return (vamsas.objects.simple.WsJobId) _resp;\r
-            } catch (java.lang.Exception _exception) {\r
-                return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);\r
-            }\r
-        }\r
+  }\r
+\r
+  public vamsas.objects.simple.SeqSearchResult getResult(\r
+          java.lang.String job_id) throws java.rmi.RemoteException\r
+  {\r
+    if (super.cachedEndpoint == null)\r
+    {\r
+      throw new org.apache.axis.NoEndPointException();\r
     }\r
-\r
-    public vamsas.objects.simple.WsJobId search(vamsas.objects.simple.Sequence s, java.lang.String database) throws java.rmi.RemoteException {\r
-        if (super.cachedEndpoint == null) {\r
-            throw new org.apache.axis.NoEndPointException();\r
-        }\r
-        org.apache.axis.client.Call _call = createCall();\r
-        _call.setOperation(_operations[3]);\r
-        _call.setUseSOAPAction(true);\r
-        _call.setSOAPActionURI("");\r
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "search"));\r
-\r
-        setRequestHeaders(_call);\r
-        setAttachments(_call);\r
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {s, database});\r
-\r
-        if (_resp instanceof java.rmi.RemoteException) {\r
-            throw (java.rmi.RemoteException)_resp;\r
-        }\r
-        else {\r
-            extractAttachments(_call);\r
-            try {\r
-                return (vamsas.objects.simple.WsJobId) _resp;\r
-            } catch (java.lang.Exception _exception) {\r
-                return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);\r
-            }\r
-        }\r
+    org.apache.axis.client.Call _call = createCall();\r
+    _call.setOperation(_operations[1]);\r
+    _call.setUseSOAPAction(true);\r
+    _call.setSOAPActionURI("");\r
+    _call\r
+            .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
+            "getResult"));\r
+\r
+    setRequestHeaders(_call);\r
+    setAttachments(_call);\r
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
+    { job_id });\r
+\r
+    if (_resp instanceof java.rmi.RemoteException)\r
+    {\r
+      throw (java.rmi.RemoteException) _resp;\r
     }\r
-\r
-    public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId) throws java.rmi.RemoteException {\r
-        if (super.cachedEndpoint == null) {\r
-            throw new org.apache.axis.NoEndPointException();\r
-        }\r
-        org.apache.axis.client.Call _call = createCall();\r
-        _call.setOperation(_operations[4]);\r
-        _call.setUseSOAPAction(true);\r
-        _call.setSOAPActionURI("");\r
-        _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
-        _call.setOperationName(new javax.xml.namespace.QName("vamsas", "cancel"));\r
-\r
-        setRequestHeaders(_call);\r
-        setAttachments(_call);\r
-        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobId});\r
-\r
-        if (_resp instanceof java.rmi.RemoteException) {\r
-            throw (java.rmi.RemoteException)_resp;\r
-        }\r
-        else {\r
-            extractAttachments(_call);\r
-            try {\r
-                return (vamsas.objects.simple.WsJobId) _resp;\r
-            } catch (java.lang.Exception _exception) {\r
-                return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils.convert(_resp, vamsas.objects.simple.WsJobId.class);\r
-            }\r
-        }\r
+    else\r
+    {\r
+      extractAttachments(_call);\r
+      try\r
+      {\r
+        return (vamsas.objects.simple.SeqSearchResult) _resp;\r
+      } catch (java.lang.Exception _exception)\r
+      {\r
+        return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils\r
+                .convert(_resp, vamsas.objects.simple.SeqSearchResult.class);\r
+      }\r
+    }\r
+  }\r
+\r
+  public vamsas.objects.simple.WsJobId psearch(\r
+          vamsas.objects.simple.Alignment al, java.lang.String database)\r
+          throws java.rmi.RemoteException\r
+  {\r
+    if (super.cachedEndpoint == null)\r
+    {\r
+      throw new org.apache.axis.NoEndPointException();\r
+    }\r
+    org.apache.axis.client.Call _call = createCall();\r
+    _call.setOperation(_operations[2]);\r
+    _call.setUseSOAPAction(true);\r
+    _call.setSOAPActionURI("");\r
+    _call\r
+            .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
+    _call.setOperationName(new javax.xml.namespace.QName("vamsas",\r
+            "psearch"));\r
+\r
+    setRequestHeaders(_call);\r
+    setAttachments(_call);\r
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
+    { al, database });\r
+\r
+    if (_resp instanceof java.rmi.RemoteException)\r
+    {\r
+      throw (java.rmi.RemoteException) _resp;\r
+    }\r
+    else\r
+    {\r
+      extractAttachments(_call);\r
+      try\r
+      {\r
+        return (vamsas.objects.simple.WsJobId) _resp;\r
+      } catch (java.lang.Exception _exception)\r
+      {\r
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils\r
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);\r
+      }\r
+    }\r
+  }\r
+\r
+  public vamsas.objects.simple.WsJobId search(\r
+          vamsas.objects.simple.Sequence s, java.lang.String database)\r
+          throws java.rmi.RemoteException\r
+  {\r
+    if (super.cachedEndpoint == null)\r
+    {\r
+      throw new org.apache.axis.NoEndPointException();\r
+    }\r
+    org.apache.axis.client.Call _call = createCall();\r
+    _call.setOperation(_operations[3]);\r
+    _call.setUseSOAPAction(true);\r
+    _call.setSOAPActionURI("");\r
+    _call\r
+            .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
+    _call\r
+            .setOperationName(new javax.xml.namespace.QName("vamsas",\r
+                    "search"));\r
+\r
+    setRequestHeaders(_call);\r
+    setAttachments(_call);\r
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
+    { s, database });\r
+\r
+    if (_resp instanceof java.rmi.RemoteException)\r
+    {\r
+      throw (java.rmi.RemoteException) _resp;\r
+    }\r
+    else\r
+    {\r
+      extractAttachments(_call);\r
+      try\r
+      {\r
+        return (vamsas.objects.simple.WsJobId) _resp;\r
+      } catch (java.lang.Exception _exception)\r
+      {\r
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils\r
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);\r
+      }\r
+    }\r
+  }\r
+\r
+  public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)\r
+          throws java.rmi.RemoteException\r
+  {\r
+    if (super.cachedEndpoint == null)\r
+    {\r
+      throw new org.apache.axis.NoEndPointException();\r
+    }\r
+    org.apache.axis.client.Call _call = createCall();\r
+    _call.setOperation(_operations[4]);\r
+    _call.setUseSOAPAction(true);\r
+    _call.setSOAPActionURI("");\r
+    _call\r
+            .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
+    _call\r
+            .setOperationName(new javax.xml.namespace.QName("vamsas",\r
+                    "cancel"));\r
+\r
+    setRequestHeaders(_call);\r
+    setAttachments(_call);\r
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
+    { jobId });\r
+\r
+    if (_resp instanceof java.rmi.RemoteException)\r
+    {\r
+      throw (java.rmi.RemoteException) _resp;\r
+    }\r
+    else\r
+    {\r
+      extractAttachments(_call);\r
+      try\r
+      {\r
+        return (vamsas.objects.simple.WsJobId) _resp;\r
+      } catch (java.lang.Exception _exception)\r
+      {\r
+        return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils\r
+                .convert(_resp, vamsas.objects.simple.WsJobId.class);\r
+      }\r
     }\r
+  }\r
 \r
 }\r