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JAL-2292 updated method calls
[jalview.git] / src / jalview / analysis / AlignSeq.java
diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index f7e8f2e..86bf721 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -620,7 +620,7 @@ public class AlignSeq
       {
         if ((i + (j * len)) < astr1.length())
         {
-          boolean sameChar = Comparison.compareChars(
+          boolean sameChar = Comparison.isSameResidue(
                   astr1.charAt(i + (j * len)), astr2.charAt(i + (j * len)),
                   false);
           if (sameChar