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sequence is char []
[jalview.git] / src / jalview / analysis / AlignSeq.java
diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 0af85f1..d0c5869 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -106,7 +106,7 @@ public class AlignSeq
      */\r
     public AlignSeq(SequenceI s1, SequenceI s2, String type)\r
     {\r
-        SeqInit(s1, s1.getSequence(), s2,  s2.getSequence(), type);\r
+        SeqInit(s1, s1.getSequenceAsString(), s2,  s2.getSequenceAsString(), type);\r
     }\r
 \r
     /**\r