JAL-1665 refactored Sequence.getSequenceFeatures

[jalview.git] / src / jalview / analysis / AlignmentSorter.java

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index b7cfbbd..3233cb1 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -20,10 +20,20 @@
  */
 package jalview.analysis;
 
-import java.util.*;
-
-import jalview.datamodel.*;
-import jalview.util.*;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.AlignmentOrder;
+import jalview.datamodel.SequenceFeature;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.datamodel.SequenceNode;
+import jalview.util.Comparison;
+import jalview.util.MessageManager;
+import jalview.util.QuickSort;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Vector;
 
 /**
  * Routines for manipulating the order of a multiple sequence alignment TODO:
@@ -785,10 +795,6 @@ public class AlignmentSorter
     for (int i = 0; i < seqs.length; i++)
     {
       SequenceFeature[] sf = seqs[i].getSequenceFeatures();
-      if (sf == null && seqs[i].getDatasetSequence() != null)
-      {
-        sf = seqs[i].getDatasetSequence().getSequenceFeatures();
-      }
       if (sf == null)
       {
         sf = new SequenceFeature[0];