JAL-2428 separate TreeModel from TreeBuilder/NJTree/AverageDistanceTree

[jalview.git] / src / jalview / analysis / AlignmentSorter.java

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index 59cdccf..a3810da 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -66,7 +66,7 @@ public class AlignmentSorter
 
   static boolean sortOrderAscending = true;
 
-  static NJTree lastTree = null;
+  static TreeModel lastTree = null;
 
   static boolean sortTreeAscending = true;
 
@@ -447,7 +447,7 @@ public class AlignmentSorter
    * @return DOCUMENT ME!
    */
   private static List<SequenceI> getOrderByTree(AlignmentI align,
-          NJTree tree)
+          TreeModel tree)
   {
     int nSeq = align.getHeight();
 
@@ -487,7 +487,7 @@ public class AlignmentSorter
    * @param tree
    *          tree which has
    */
-  public static void sortByTree(AlignmentI align, NJTree tree)
+  public static void sortByTree(AlignmentI align, TreeModel tree)
   {
     List<SequenceI> tmp = getOrderByTree(align, tree);