Merge branch 'develop' into features/JAL-518_justify_seqs_in_region

[jalview.git] / src / jalview / analysis / AverageDistanceTree.java

diff --git a/src/jalview/analysis/AverageDistanceTree.java b/src/jalview/analysis/AverageDistanceTree.java
index c726627..760962e 100644 (file)
--- a/src/jalview/analysis/AverageDistanceTree.java
+++ b/src/jalview/analysis/AverageDistanceTree.java
@@ -22,7 +22,7 @@ package jalview.analysis;
 
 import jalview.api.analysis.ScoreModelI;
 import jalview.api.analysis.SimilarityParamsI;
-import jalview.datamodel.SequenceNode;
+import jalview.datamodel.BinaryNode;
 import jalview.viewmodel.AlignmentViewport;
 
 /**
@@ -113,25 +113,25 @@ public class AverageDistanceTree extends TreeBuilder
    * {@inheritDoc}
    */
   @Override
-  protected void findNewDistances(SequenceNode nodei, SequenceNode nodej,
+  protected void findNewDistances(BinaryNode nodei, BinaryNode nodej,
           double dist)
   {
     double ih = 0;
     double jh = 0;
 
-    SequenceNode sni = nodei;
-    SequenceNode snj = nodej;
+    BinaryNode sni = nodei;
+    BinaryNode snj = nodej;
 
     while (sni != null)
     {
       ih = ih + sni.dist;
-      sni = (SequenceNode) sni.left();
+      sni = (BinaryNode) sni.left();
     }
 
     while (snj != null)
     {
       jh = jh + snj.dist;
-      snj = (SequenceNode) snj.left();
+      snj = (BinaryNode) snj.left();
     }
 
     nodei.dist = ((dist / 2) - ih);