Merge branch 'releases/Release_2_11_3_Branch'

[jalview.git] / src / jalview / analysis / CodingUtils.java

diff --git a/src/jalview/analysis/CodingUtils.java b/src/jalview/analysis/CodingUtils.java
index 91c14c0..7fb0eb8 100644 (file)
--- a/src/jalview/analysis/CodingUtils.java
+++ b/src/jalview/analysis/CodingUtils.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -109,6 +109,15 @@ public class CodingUtils
     return result;
   }
 
+  public static void decodeCodon2(int encoded, char[] result)
+  {
+    result[2] = decodeNucleotide(encoded & 3);
+    encoded = encoded >>> CODON_ENCODING_BITSHIFT;
+    result[1] = decodeNucleotide(encoded & 3);
+    encoded = encoded >>> CODON_ENCODING_BITSHIFT;
+    result[0] = decodeNucleotide(encoded & 3);
+  }
+
   /**
    * Convert value 0/1/2/3 to 'A'/'C'/'G'/'T'
    *