*/
package jalview.analysis;
+import jalview.analysis.scoremodels.PairwiseSeqScoreModel;
+import jalview.analysis.scoremodels.ScoreModels;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.datamodel.ResidueCount;
quality = new Vector<Double>();
double max = -10000;
- float[][] BLOSUM62 = ResidueProperties.getBLOSUM62();
+ float[][] BLOSUM62 = ((PairwiseSeqScoreModel) ScoreModels.getInstance()
+ .forName(ScoreModels.BLOSUM62)).getMatrix();
// Loop over columns // JBPNote Profiling info
// long ts = System.currentTimeMillis();