Merge branch 'feature/JAL-3063JAXB' into Jalview-BH/JAL-3026-JAL-3063-JAXB

[jalview.git] / src / jalview / analysis / Conservation.java

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index 279d309..bd87ee8 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -724,8 +724,8 @@ public class Conservation
 
   /**
    * Complete the given consensus and quuality annotation rows. Note: currently
-   * this method will enlarge the given annotation row if it is too small,
-   * otherwise will leave its length unchanged.
+   * this method will reallocate the given annotation row if it is different to
+   * the calculated width, otherwise will leave its length unchanged.
    * 
    * @param conservation
    *          conservation annotation row
@@ -757,7 +757,7 @@ public class Conservation
     float qmax = 0f;
 
     if (conservation != null && conservation.annotations != null
-            && conservation.annotations.length < alWidth)
+            && conservation.annotations.length != alWidth)
     {
       conservation.annotations = new Annotation[alWidth];
     }
@@ -766,7 +766,7 @@ public class Conservation
     {
       quality2.graphMax = (float) qualityMaximum;
       if (quality2.annotations != null
-              && quality2.annotations.length < alWidth)
+              && quality2.annotations.length != alWidth)
       {
         quality2.annotations = new Annotation[alWidth];
       }