JAL-2416 JAL-2403 remove unused '*' row/column from score matrices

[jalview.git] / src / jalview / analysis / Conservation.java

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index 55881d7..f4346c3 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -614,9 +614,7 @@ public class Conservation
       lengths[l] = seqNums.elementAt(l).length - 1;
     }
 
-    // todo ? remove '*' (unused?) from score matrix and
-    // use getSize() here instead of getSize() - 1 ??
-    final int symbolCount = blosum62.getSize() - 1; // 24;
+    final int symbolCount = blosum62.getSize();
     int gapIndex = blosum62.getGapIndex();
 
     for (j = startRes; j <= endRes; j++)