JAL-1264 remove broken applet build dependencies

[jalview.git] / src / jalview / analysis / CrossRef.java

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index eed2d7e..47bd7bc 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -583,49 +583,6 @@ public class CrossRef
   }
 
   /**
-   * Returns true if either sequence has a cross-reference to the other
-   * 
-   * @param seq1
-   * @param seq2
-   * @return
-   */
-  public static boolean haveCrossRef(SequenceI seq1, SequenceI seq2)
-  {
-    return hasCrossRef(seq1, seq2) || hasCrossRef(seq2, seq1);
-  }
-
-  /**
-   * Returns true if seq1 has a cross-reference to seq2. Currently this assumes
-   * that sequence name is structured as Source|AccessId.
-   * 
-   * @param seq1
-   * @param seq2
-   * @return
-   */
-  public static boolean hasCrossRef(SequenceI seq1, SequenceI seq2)
-  {
-    if (seq1 == null || seq2 == null)
-    {
-      return false;
-    }
-    String name = seq2.getName();
-    final DBRefEntry[] xrefs = seq1.getDBRef();
-    if (xrefs != null)
-    {
-      for (DBRefEntry xref : xrefs)
-      {
-        String xrefName = xref.getSource() + "|" + xref.getAccessionId();
-        // case-insensitive test, consistent with DBRefEntry.equalRef()
-        if (xrefName.equalsIgnoreCase(name))
-        {
-          return true;
-        }
-      }
-    }
-    return false;
-  }
-
-  /**
    * precalculate different products that can be found for seqs in dataset and
    * return them.
    *