Properly integrated endGaps option for AlignSeq.traceAlignment()

[jalview.git] / src / jalview / analysis / Finder.java

diff --git a/src/jalview/analysis/Finder.java b/src/jalview/analysis/Finder.java
index 21fa2f1..c84c69a 100644 (file)
--- a/src/jalview/analysis/Finder.java
+++ b/src/jalview/analysis/Finder.java
@@ -606,7 +606,8 @@ public class Finder implements FinderI
     }
     else
     {
-      allFeatures = sf.getAllFeatures(null);
+      //allFeatures = sf.getAllFeatures(null);
+      allFeatures = sf.getAllFeatures();
     }
     // so we can check we are advancing when debugging
     long fpos = 0;