import java.util.Enumeration;
import java.util.Hashtable;
+import java.util.List;
import java.util.Vector;
/**
*
* @param sequences
* @param selectedChars
- * @param exgroups
+ * @param list
* @return
*/
public static SequenceGroup[] makeGroupsFrom(SequenceI[] sequences,
- String[] selectedChars, Vector exgroups)
+ String[] selectedChars, List<SequenceGroup> list)
{
// TODO: determine how to get/recover input data for group generation
Hashtable gps = new Hashtable();
int width = 0, i;
Hashtable pgroup = new Hashtable();
- if (exgroups != null)
+ if (list != null)
{
- SequenceGroup sg;
- for (Enumeration g = exgroups.elements(); g.hasMoreElements();)
+ for (SequenceGroup sg:list)
{
- sg = (SequenceGroup) g.nextElement();
- for (Enumeration sq = sg.getSequences(null).elements(); sq
- .hasMoreElements();)
- pgroup.put(sq.nextElement().toString(), sg);
+ for (SequenceI sq :sg.getSequences(null))
+ {
+ pgroup.put(sq.toString(), sg);
+ }
}
}
for (i = 0; i < sequences.length; i++)