JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and

[jalview.git] / src / jalview / analysis / scoremodels / FeatureDistanceModel.java

diff --git a/src/jalview/analysis/scoremodels/FeatureDistanceModel.java b/src/jalview/analysis/scoremodels/FeatureDistanceModel.java
index 9245898..636c19b 100644 (file)
--- a/src/jalview/analysis/scoremodels/FeatureDistanceModel.java
+++ b/src/jalview/analysis/scoremodels/FeatureDistanceModel.java
@@ -23,6 +23,7 @@ package jalview.analysis.scoremodels;
 import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureRenderer;
 import jalview.api.analysis.DistanceScoreModelI;
+import jalview.api.analysis.SimilarityParamsI;
 import jalview.api.analysis.ViewBasedAnalysisI;
 import jalview.datamodel.AlignmentView;
 import jalview.datamodel.SeqCigar;
@@ -58,7 +59,8 @@ public class FeatureDistanceModel implements DistanceScoreModelI,
    * of columns processed.
    */
   @Override
-  public MatrixI findDistances(AlignmentView seqData)
+  public MatrixI findDistances(AlignmentView seqData,
+          SimilarityParamsI options)
   {
     List<String> dft = fr.getDisplayedFeatureTypes();
     SeqCigar[] seqs = seqData.getSequences();