JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...

[jalview.git] / src / jalview / analysis / scoremodels / FeatureDistanceModel.java

diff --git a/src/jalview/analysis/scoremodels/FeatureDistanceModel.java b/src/jalview/analysis/scoremodels/FeatureDistanceModel.java
index ddbaf73..38217e9 100644 (file)
--- a/src/jalview/analysis/scoremodels/FeatureDistanceModel.java
+++ b/src/jalview/analysis/scoremodels/FeatureDistanceModel.java
@@ -55,12 +55,12 @@ public class FeatureDistanceModel extends DistanceScoreModel
   @Override
   public ScoreModelI getInstance(AlignmentViewPanel view)
   {
-    FeatureDistanceModel instance;
+    FeatureDistanceModel model;
     try
     {
-      instance = this.getClass().newInstance();
-      instance.configureFromAlignmentView(view);
-      return instance;
+      model = this.getClass().newInstance();
+      model.configureFromAlignmentView(view);
+      return model;
     } catch (InstantiationException | IllegalAccessException e)
     {
       System.err.println("Error in " + getClass().getName()
@@ -124,8 +124,8 @@ public class FeatureDistanceModel extends DistanceScoreModel
         /*
          * first record feature types in this column for each sequence
          */
-        Map<SeqCigar, Set<String>> sfap = findFeatureTypesAtColumn(
-                seqs, cpos);
+        Map<SeqCigar, Set<String>> sfap = findFeatureTypesAtColumn(seqs,
+                cpos);
 
         /*
          * count feature types on either i'th or j'th sequence but not both