JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and

[jalview.git] / src / jalview / analysis / scoremodels / SWDistanceModel.java

diff --git a/src/jalview/analysis/scoremodels/SWDistanceModel.java b/src/jalview/analysis/scoremodels/SWDistanceModel.java
index 5e711db..b27cf26 100644 (file)
--- a/src/jalview/analysis/scoremodels/SWDistanceModel.java
+++ b/src/jalview/analysis/scoremodels/SWDistanceModel.java
@@ -22,6 +22,7 @@ package jalview.analysis.scoremodels;
 
 import jalview.analysis.AlignSeq;
 import jalview.api.analysis.DistanceScoreModelI;
+import jalview.api.analysis.SimilarityParamsI;
 import jalview.datamodel.AlignmentView;
 import jalview.datamodel.SequenceI;
 import jalview.math.Matrix;
@@ -32,7 +33,8 @@ public class SWDistanceModel implements DistanceScoreModelI
 {
 
   @Override
-  public MatrixI findDistances(AlignmentView seqData)
+  public MatrixI findDistances(AlignmentView seqData,
+          SimilarityParamsI options)
   {
     SequenceI[] sequenceString = seqData.getVisibleAlignment(
             Comparison.GAP_SPACE).getSequencesArray();