import jalview.api.AlignmentViewPanel;
import jalview.api.analysis.ScoreModelI;
-import jalview.api.analysis.ViewBasedAnalysisI;
import jalview.io.DataSourceType;
import jalview.io.FileParse;
import jalview.io.ScoreMatrixFile;
public ScoreModelI getScoreModel(String name, AlignmentViewPanel avp)
{
ScoreModelI model = models.get(name);
- if (model instanceof ViewBasedAnalysisI)
- {
- try
- {
- model = model.getClass().newInstance();
- ((ViewBasedAnalysisI) model).configureFromAlignmentView(avp);
- } catch (IllegalAccessException | InstantiationException e)
- {
- System.err.println("Error creating score model " + name + ": "
- + e.getMessage());
- return null;
- }
- }
- return model;
+ return model == null ? null : model.getInstance(avp);
}
public void registerScoreModel(ScoreModelI sm)