import jalview.datamodel.AlignmentView;
import jalview.datamodel.CigarArray;
import jalview.datamodel.ColumnSelection;
-import jalview.datamodel.Profile;
+import jalview.datamodel.ProfileI;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
ColumnSelection getColumnSelection();
- Profile[] getSequenceConsensusHash();
+ ProfileI[] getSequenceConsensusHash();
/**
* Get consensus data table for the cDNA complement of this alignment (if any)
*
* @param hconsensus
*/
- void setSequenceConsensusHash(Profile[] hconsensus);
+ void setSequenceConsensusHash(ProfileI[] hconsensus);
/**
* Set the cDNA complement consensus for the viewport