Merge branch 'develop' into improvement/JAL-4409_implement_extra_schemes_in_getdown

[jalview.git] / src / jalview / api / analysis / ScoreModelI.java

diff --git a/src/jalview/api/analysis/ScoreModelI.java b/src/jalview/api/analysis/ScoreModelI.java
index 275cd92..a243c0c 100644 (file)
--- a/src/jalview/api/analysis/ScoreModelI.java
+++ b/src/jalview/api/analysis/ScoreModelI.java
@@ -62,6 +62,21 @@ public interface ScoreModelI
 
   // TODO getName, isDNA, isProtein can be static methods in Java 8
 
+  
+  default public boolean isSecondaryStructure()
+  {
+    return false;
+  }
+
+  /**
+   * Answers false by default 
+   * Answers true if the data has secondary structure (so should be
+   * shown in menus in that context)
+   * 
+   * @return
+   */
+  
+  
   /**
    * Returns a distance score for the given sequence regions, that is, a matrix
    * whose value [i][j] is the distance of sequence i from sequence j by some