import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.schemes.ColourSchemeI;
+import jalview.schemes.UserColourScheme;
import jalview.structure.StructureMappingcommandSet;
import jalview.structure.StructureSelectionManager;
* shutdown any structure viewing processes started by this display
*/
void closeViewer();
+ /**
+ * apply a colourscheme to the structures in the viewer
+ * @param colourScheme
+ */
+ void setJalviewColourScheme(ColourSchemeI colourScheme);
}