JAL-98 JAL-1854 encapsulate 'magic number' threshold 3 in Conservation

[jalview.git] / src / jalview / appletgui / APopupMenu.java

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index c30fdad..7b0d4fb 100644 (file)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -1206,11 +1206,10 @@ public class APopupMenu extends java.awt.PopupMenu implements
 
     if (conservationMenuItem.getState())
     {
-
-      sg.cs.setConservation(Conservation.calculateConservation("Group", 3,
-              sg.getSequences(ap.av.getHiddenRepSequences()), 0, ap.av
-                      .getAlignment().getWidth(), false, ap.av
-                      .getConsPercGaps(), false));
+      sg.cs.setConservation(Conservation.calculateConservation("Group", sg
+              .getSequences(ap.av.getHiddenRepSequences()), 0, ap.av
+              .getAlignment().getWidth(), false, ap.av.getConsPercGaps(),
+              false));
       SliderPanel.setConservationSlider(ap, sg.cs, sg.getName());
       SliderPanel.showConservationSlider();
     }