AAFrequency optimized

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 9152939..8e54ba9 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1247,7 +1247,7 @@ public void itemStateChanged(ItemEvent evt)
                           viewport.alignment.getWidth());\r
       }\r
 \r
-      cs.setConsensus(viewport.vconsensus);\r
+      cs.setConsensus(viewport.hconsensus);\r
       if (cs.conservationApplied())\r
       {\r
         Alignment al = (Alignment) viewport.alignment;\r
@@ -1487,7 +1487,7 @@ public void itemStateChanged(ItemEvent evt)
         cs.setConservation(null);\r
       }\r
 \r
-      cs.setConsensus(viewport.vconsensus);\r
+      cs.setConsensus(viewport.hconsensus);\r
 \r
     }\r
     viewport.setGlobalColourScheme(cs);\r