public jalview.bin.JalviewLite applet;
- boolean MAC = false;
-
private AnnotationColumnChooser annotationColumnSelectionState;
java.awt.Frame nullFrame;
public AlignViewport(AlignmentI al, JalviewLite applet)
{
super(al);
- calculator = new jalview.workers.AlignCalcManager();
+ calculator = new jalview.workers.AlignCalcManager2();
this.applet = applet;
// we always pad gaps
}
setFont(font, true);
- MAC = new jalview.util.Platform().isAMac();
-
if (applet != null)
{
setShowJVSuffix(
if (colour != null)
{
- residueShading = new ResidueShader(
- ColourSchemeProperty.getColourScheme(this, alignment,
- colour));
+ residueShading = new ResidueShader(ColourSchemeProperty
+ .getColourScheme(this, alignment, colour));
if (residueShading != null)
{
residueShading.setConsensus(consensusProfiles);
public void resetSeqLimits(int height)
{
- ranges.setEndSeq(height / getCharHeight());
+ ranges.setEndSeq(height / getCharHeight() - 1); // BH 2019.04.18
}
boolean centreColumnLabels;
if (mappedCommand != null)
{
mappedCommand.doCommand(null);
- firePropertyChange("alignment", null, getAlignment().getSequences());
+ notifyAlignment();
// ap.scalePanelHolder.repaint();
// ap.repaint();
}
/**
- * Applies the supplied feature settings descriptor to currently known features.
- * This supports an 'initial configuration' of feature colouring based on a
- * preset or user favourite. This may then be modified in the usual way using
- * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+ * Applies the supplied feature settings descriptor to currently known
+ * features. This supports an 'initial configuration' of feature colouring
+ * based on a preset or user favourite. This may then be modified in the usual
+ * way using the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
*
* @param featureSettings
*/
}
/**
- * Merges the supplied feature settings descriptor with existing feature styles.
- * This supports an 'initial configuration' of feature colouring based on a
- * preset or user favourite. This may then be modified in the usual way using
- * the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
+ * Merges the supplied feature settings descriptor with existing feature
+ * styles. This supports an 'initial configuration' of feature colouring based
+ * on a preset or user favourite. This may then be modified in the usual way
+ * using the Feature Settings dialogue. NOT IMPLEMENTED FOR APPLET
*
* @param featureSettings
*/