Conservation colour scheme is no more

[jalview.git] / src / jalview / appletgui / AlignmentPanel.java

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 5e09da7..b46876a 100755 (executable)
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -288,29 +288,6 @@ public class AlignmentPanel
 \r
   }\r
 \r
-  public void setColourScheme()\r
-  {\r
-    ColourSchemeI cs = av.getGlobalColourScheme();\r
-\r
-    if (av.getConservationSelected())\r
-    {\r
-\r
-      Alignment al = (Alignment) av.getAlignment();\r
-      Conservation c = new Conservation("All",\r
-                                        ResidueProperties.propHash, 3,\r
-                                        al.getSequences(), 0,\r
-                                        al.getWidth());\r
-\r
-      c.calculate();\r
-      c.verdict(false, av.ConsPercGaps);\r
-      ConservationColourScheme ccs = new ConservationColourScheme(c, cs);\r
-\r
-      av.setGlobalColourScheme(ccs);\r
-\r
-    }\r
-\r
-    repaint();\r
-  }\r
 \r
   int hextent = 0;\r
   int vextent = 0;\r