/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
\r
package jalview.appletgui;\r
\r
+import java.util.*;\r
+\r
import java.awt.*;\r
import java.awt.event.*;\r
\r
import jalview.datamodel.*;\r
\r
public class AnnotationLabels\r
- extends Panel implements ActionListener\r
+ extends Panel implements ActionListener, MouseListener, MouseMotionListener\r
{\r
+ Image image;\r
boolean active = false;\r
AlignmentPanel ap;\r
AlignViewport av;\r
boolean resizing = false;\r
int oldY, mouseX;\r
- static String ADDNEW = "Add new row";\r
+ static String EDITNAME = "Edit label/description";\r
static String HIDE = "Hide this row";\r
static String DELETE = "Delete this row";\r
static String SHOWALL = "Show all hidden rows";\r
static String OUTPUT_TEXT = "Show Values In Textbox";\r
+ static String COPYCONS_SEQ = "Copy Consensus Sequence";\r
+\r
int selectedRow = 0;\r
int scrollOffset = 0;\r
\r
+ Tooltip tooltip;\r
+\r
public AnnotationLabels(AlignmentPanel ap)\r
{\r
this.ap = ap;\r
this.av = ap.av;\r
setLayout(null);\r
- addMouseListener(new MouseAdapter()\r
- {\r
- public void mousePressed(MouseEvent evt)\r
- {\r
- doMousePressed(evt);\r
- }\r
- });\r
+ addMouseListener(this);\r
+ addMouseMotionListener(this);\r
}\r
\r
public AnnotationLabels(AlignViewport av)\r
-{\r
- this.av = av;\r
-}\r
-\r
+ {\r
+ this.av = av;\r
+ }\r
\r
public void setScrollOffset(int y)\r
{\r
repaint();\r
}\r
\r
+ void getSelectedRow(int y)\r
+ {\r
+ selectedRow = -1;\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
+\r
+ if (aa == null)\r
+ {\r
+ return;\r
+ }\r
+\r
+ int height = 0;\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ if (!aa[i].visible)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ height += aa[i].height;\r
+ if (y < height)\r
+ {\r
+ selectedRow = i;\r
+ break;\r
+ }\r
+ }\r
+ }\r
+\r
public void actionPerformed(ActionEvent evt)\r
{\r
AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation();\r
\r
+ if (evt.getActionCommand().equals(EDITNAME))\r
+ {\r
+ EditNameDialog dialog = new EditNameDialog(\r
+ aa[selectedRow].label,\r
+ aa[selectedRow].description,\r
+ " Annotation Label",\r
+ "Annotation Description",\r
+ ap,\r
+ "Edit Annotation Name / Description");\r
+\r
+ if (dialog.accept)\r
+ {\r
+ aa[selectedRow].label = dialog.getName();\r
+ aa[selectedRow].description = dialog.getDescription();\r
+ repaint();\r
+ }\r
+ }\r
if (evt.getActionCommand().equals(HIDE))\r
{\r
aa[selectedRow].visible = false;\r
}\r
else if (evt.getActionCommand().equals(OUTPUT_TEXT))\r
{\r
- CutAndPasteTransfer cap = new CutAndPasteTransfer(false, ap.alignFrame.applet);\r
+ CutAndPasteTransfer cap = new CutAndPasteTransfer(false, ap.alignFrame);\r
Frame frame = new Frame();\r
frame.add(cap);\r
jalview.bin.JalviewLite.addFrame(frame,\r
aa[selectedRow].label, 500, 100);\r
cap.setText(aa[selectedRow].toString());\r
}\r
+ else if (evt.getActionCommand().equals(COPYCONS_SEQ))\r
+ {\r
+ SequenceI cons = av.getConsensusSeq();\r
+ if (cons != null)\r
+ {\r
+ copy_annotseqtoclipboard(cons);\r
+ }\r
\r
+ }\r
ap.annotationPanel.adjustPanelHeight();\r
setSize(getSize().width, ap.annotationPanel.getSize().height);\r
ap.validate();\r
ap.repaint();\r
}\r
\r
- public void doMousePressed(MouseEvent evt)\r
+ public void mouseMoved(MouseEvent evt)\r
{\r
- int y = evt.getY() - scrollOffset;\r
- AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
- int height = 0;\r
- for (int i = 0; i < aa.length; i++)\r
+ getSelectedRow(evt.getY() - scrollOffset);\r
+\r
+ if (selectedRow > -1)\r
{\r
- if (!aa[i].visible)\r
+ if (tooltip == null)\r
{\r
- continue;\r
+ tooltip = new Tooltip(ap.av.alignment.\r
+ getAlignmentAnnotation()[selectedRow].\r
+ description,\r
+ this);\r
}\r
-\r
- height += aa[i].height;\r
- if (y < height)\r
+ else\r
{\r
- selectedRow = i;\r
- break;\r
+ tooltip.setTip(ap.av.alignment.\r
+ getAlignmentAnnotation()[selectedRow].description);\r
}\r
}\r
+ else if (tooltip != null)\r
+ {\r
+ tooltip.setTip("");\r
+ }\r
+\r
+ }\r
+\r
+ public void mouseDragged(MouseEvent evt)\r
+ {}\r
+\r
+ public void mouseClicked(MouseEvent evt)\r
+ {}\r
+\r
+ public void mouseReleased(MouseEvent evt)\r
+ {}\r
+\r
+ public void mouseEntered(MouseEvent evt)\r
+ {}\r
+\r
+ public void mouseExited(MouseEvent evt)\r
+ {}\r
+\r
+ public void mousePressed(MouseEvent evt)\r
+ {\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
\r
PopupMenu pop = new PopupMenu("Annotations");\r
- MenuItem item = new MenuItem(HIDE);\r
+\r
+ MenuItem item = new MenuItem(EDITNAME);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new MenuItem(HIDE);\r
item.addActionListener(this);\r
pop.add(item);\r
item = new MenuItem(SHOWALL);\r
item.addActionListener(this);\r
pop.add(item);\r
\r
- if (aa[selectedRow].label.equals("Consensus"))\r
+ if (aa[selectedRow] == ap.av.consensus)\r
{\r
pop.addSeparator();\r
final CheckboxMenuItem cbmi = new CheckboxMenuItem(\r
}\r
});\r
pop.add(cbmi);\r
+ final MenuItem cpcons = new MenuItem(COPYCONS_SEQ);\r
+ cpcons.addActionListener(this);\r
+ pop.add(cpcons);\r
}\r
\r
- pop.show(this, evt.getX(), evt.getY());\r
+ pop.show(this, evt.getX(), evt.getY());\r
\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ protected void copy_annotseqtoclipboard(SequenceI sq)\r
+ {\r
+ if (sq == null || sq.getLength() < 1)\r
+ {\r
+ return;\r
+ }\r
+ jalview.appletgui.AlignFrame.copiedSequences = new StringBuffer();\r
+ jalview.appletgui.AlignFrame.copiedSequences.append(sq.getName() + "\t" +\r
+ sq.getStart() + "\t" +\r
+ sq.getEnd() + "\t" +\r
+ sq.getSequenceAsString() + "\n");\r
+ if (av.hasHiddenColumns)\r
+ {\r
+ jalview.appletgui.AlignFrame.copiedHiddenColumns = new Vector();\r
+ for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size(); i++)\r
+ {\r
+ int[] region = (int[])\r
+ av.getColumnSelection().getHiddenColumns().elementAt(i);\r
+\r
+ jalview.appletgui.AlignFrame.copiedHiddenColumns.addElement(new int[]\r
+ {region[0],\r
+ region[1]});\r
+ }\r
+ }\r
+ }\r
+\r
+ public void update(Graphics g)\r
+ {\r
+ paint(g);\r
+ }\r
+\r
public void paint(Graphics g)\r
{\r
- drawComponent(g, getSize().width);\r
+ int w = getSize().width;\r
+ if (image == null || w != image.getWidth(this))\r
+ {\r
+ image = createImage(w, ap.annotationPanel.getSize().height);\r
+ }\r
+\r
+ drawComponent(image.getGraphics(), w);\r
+ g.drawImage(image, 0, 0, this);\r
}\r
\r
public void drawComponent(Graphics g, int width)\r
{\r
- FontMetrics fm = g.getFontMetrics(g.getFont());\r
+ g.setFont(av.getFont());\r
+ FontMetrics fm = g.getFontMetrics(av.getFont());\r
g.setColor(Color.white);\r
g.fillRect(0, 0, getSize().width, getSize().height);\r
\r
\r
x = width - fm.stringWidth(aa[i].label) - 3;\r
\r
- if (aa[i].graph>0)\r
+ if (aa[i].graph > 0)\r
{\r
y += (aa[i].height / 3);\r
}\r
\r
g.drawString(aa[i].label, x, y);\r
\r
- if (aa[i].graph>0)\r
+ if (aa[i].graph > 0)\r
{\r
y += (2 * aa[i].height / 3);\r
}\r
git://source.jalview.org / jalview.git / blobdiff