+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
\r
package jalview.appletgui;\r
\r
-import java.awt.event.*;\r
+import java.util.*;\r
+\r
import java.awt.*;\r
+import java.awt.event.*;\r
+\r
import jalview.datamodel.*;\r
\r
-public class AnnotationLabels extends Panel\r
+public class AnnotationLabels\r
+ extends Panel implements ActionListener, MouseListener, MouseMotionListener\r
{\r
- boolean active = false;\r
Image image;\r
- AlignmentPanel ap ;\r
+ boolean active = false;\r
+ AlignmentPanel ap;\r
+ AlignViewport av;\r
boolean resizing = false;\r
int oldY, mouseX;\r
- static String ADDNEW = "Add new row";\r
+ static String EDITNAME = "Edit label/description";\r
static String HIDE = "Hide this row";\r
static String DELETE = "Delete this row";\r
- static String SHOWALL="Show all hidden rows";\r
+ static String SHOWALL = "Show all hidden rows";\r
+ static String OUTPUT_TEXT = "Show Values In Textbox";\r
+ static String COPYCONS_SEQ = "Copy Consensus Sequence";\r
+\r
int selectedRow = 0;\r
int scrollOffset = 0;\r
\r
+ Tooltip tooltip;\r
+\r
public AnnotationLabels(AlignmentPanel ap)\r
{\r
this.ap = ap;\r
+ this.av = ap.av;\r
setLayout(null);\r
+ addMouseListener(this);\r
+ addMouseMotionListener(this);\r
+ }\r
\r
- java.net.URL url = getClass().getResource("/images/idwidth.gif");\r
- if (url != null)\r
- image = java.awt.Toolkit.getDefaultToolkit().getImage(url);\r
-\r
- try\r
- {\r
- MediaTracker mt = new MediaTracker(this);\r
- mt.addImage(image, 0);\r
- mt.waitForID(0);\r
- }\r
- catch (Exception ex) {}\r
+ public AnnotationLabels(AlignViewport av)\r
+ {\r
+ this.av = av;\r
}\r
\r
public void setScrollOffset(int y)\r
repaint();\r
}\r
\r
- public void paint(Graphics g)\r
+ void getSelectedRow(int y)\r
{\r
- drawComponent(g);\r
+ selectedRow = -1;\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
+\r
+ if (aa == null)\r
+ {\r
+ return;\r
+ }\r
+\r
+ int height = 0;\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ if (!aa[i].visible)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ height += aa[i].height;\r
+ if (y < height)\r
+ {\r
+ selectedRow = i;\r
+ break;\r
+ }\r
+ }\r
}\r
\r
- public void drawComponent(Graphics g)\r
+ public void actionPerformed(ActionEvent evt)\r
{\r
- FontMetrics fm = g.getFontMetrics(g.getFont());\r
- g.setColor(Color.white);\r
- g.fillRect(0,0, getSize().width, getSize().height);\r
+ AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation();\r
\r
- g.translate(0, scrollOffset);\r
- g.setColor(Color.black);\r
+ if (evt.getActionCommand().equals(EDITNAME))\r
+ {\r
+ EditNameDialog dialog = new EditNameDialog(\r
+ aa[selectedRow].label,\r
+ aa[selectedRow].description,\r
+ " Annotation Label",\r
+ "Annotation Description",\r
+ ap,\r
+ "Edit Annotation Name / Description");\r
\r
- AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
- int y = g.getFont().getSize();\r
- int x = 0;\r
+ if (dialog.accept)\r
+ {\r
+ aa[selectedRow].label = dialog.getName();\r
+ aa[selectedRow].description = dialog.getDescription();\r
+ repaint();\r
+ }\r
+ }\r
+ if (evt.getActionCommand().equals(HIDE))\r
+ {\r
+ aa[selectedRow].visible = false;\r
+ }\r
+ else if (evt.getActionCommand().equals(SHOWALL))\r
+ {\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ aa[i].visible = true;\r
+ }\r
+ }\r
+ else if (evt.getActionCommand().equals(OUTPUT_TEXT))\r
+ {\r
+ CutAndPasteTransfer cap = new CutAndPasteTransfer(false, ap.alignFrame);\r
+ Frame frame = new Frame();\r
+ frame.add(cap);\r
+ jalview.bin.JalviewLite.addFrame(frame,\r
+ ap.alignFrame.getTitle() + " - " +\r
+ aa[selectedRow].label, 500, 100);\r
+ cap.setText(aa[selectedRow].toString());\r
+ }\r
+ else if (evt.getActionCommand().equals(COPYCONS_SEQ))\r
+ {\r
+ SequenceI cons = av.getConsensusSeq();\r
+ if (cons != null)\r
+ {\r
+ copy_annotseqtoclipboard(cons);\r
+ }\r
\r
- if(aa!=null)\r
- for(int i=0; i<aa.length; i++)\r
- {\r
- if(!aa[i].visible)\r
- continue;\r
+ }\r
+ ap.annotationPanel.adjustPanelHeight();\r
+ setSize(getSize().width, ap.annotationPanel.getSize().height);\r
+ ap.validate();\r
+ ap.repaint();\r
+ }\r
\r
- x = getSize().width - fm.stringWidth(aa[i].label)-3;\r
+ public void mouseMoved(MouseEvent evt)\r
+ {\r
+ getSelectedRow(evt.getY() - scrollOffset);\r
\r
- if(aa[i].isGraph)\r
- y+=(aa[i].height/3);\r
+ if (selectedRow > -1)\r
+ {\r
+ if (tooltip == null)\r
+ {\r
+ tooltip = new Tooltip(ap.av.alignment.\r
+ getAlignmentAnnotation()[selectedRow].\r
+ description,\r
+ this);\r
+ }\r
+ else\r
+ {\r
+ tooltip.setTip(ap.av.alignment.\r
+ getAlignmentAnnotation()[selectedRow].description);\r
+ }\r
+ }\r
+ else if (tooltip != null)\r
+ {\r
+ tooltip.setTip("");\r
+ }\r
\r
- g.drawString(aa[i].label, x, y);\r
+ }\r
\r
- if(aa[i].isGraph)\r
- y+=(2*aa[i].height/3);\r
- else\r
- y+=aa[i].height;\r
- }\r
+ public void mouseDragged(MouseEvent evt)\r
+ {}\r
\r
- if (active)\r
- {\r
- if (image != null)\r
- g.drawImage(image, 2, 0, this);\r
- }\r
+ public void mouseClicked(MouseEvent evt)\r
+ {}\r
\r
- if (aa == null || aa.length<1)\r
- {\r
- g.drawString("Right click", 2, 8);\r
- g.drawString("to add annotation", 2, 18);\r
- }\r
+ public void mouseReleased(MouseEvent evt)\r
+ {}\r
\r
+ public void mouseEntered(MouseEvent evt)\r
+ {}\r
\r
+ public void mouseExited(MouseEvent evt)\r
+ {}\r
\r
+ public void mousePressed(MouseEvent evt)\r
+ {\r
+ AlignmentAnnotation[] aa = ap.av.alignment.getAlignmentAnnotation();\r
+\r
+ PopupMenu pop = new PopupMenu("Annotations");\r
+\r
+ MenuItem item = new MenuItem(EDITNAME);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new MenuItem(HIDE);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ item = new MenuItem(SHOWALL);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+ this.add(pop);\r
+ item = new MenuItem(OUTPUT_TEXT);\r
+ item.addActionListener(this);\r
+ pop.add(item);\r
+\r
+ if (aa[selectedRow] == ap.av.consensus)\r
+ {\r
+ pop.addSeparator();\r
+ final CheckboxMenuItem cbmi = new CheckboxMenuItem(\r
+ "Ignore Gaps In Consensus",\r
+ ap.av.getIgnoreGapsConsensus());\r
+\r
+ cbmi.addItemListener(new ItemListener()\r
+ {\r
+ public void itemStateChanged(ItemEvent e)\r
+ {\r
+ ap.av.setIgnoreGapsConsensus(cbmi.getState());\r
+ ap.repaint();\r
+ }\r
+ });\r
+ pop.add(cbmi);\r
+ final MenuItem cpcons = new MenuItem(COPYCONS_SEQ);\r
+ cpcons.addActionListener(this);\r
+ pop.add(cpcons);\r
+ }\r
+\r
+ pop.show(this, evt.getX(), evt.getY());\r
+\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ protected void copy_annotseqtoclipboard(SequenceI sq)\r
+ {\r
+ if (sq == null || sq.getLength() < 1)\r
+ {\r
+ return;\r
+ }\r
+ jalview.appletgui.AlignFrame.copiedSequences = new StringBuffer();\r
+ jalview.appletgui.AlignFrame.copiedSequences.append(sq.getName() + "\t" +\r
+ sq.getStart() + "\t" +\r
+ sq.getEnd() + "\t" +\r
+ sq.getSequenceAsString() + "\n");\r
+ if (av.hasHiddenColumns)\r
+ {\r
+ jalview.appletgui.AlignFrame.copiedHiddenColumns = new Vector();\r
+ for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size(); i++)\r
+ {\r
+ int[] region = (int[])\r
+ av.getColumnSelection().getHiddenColumns().elementAt(i);\r
+\r
+ jalview.appletgui.AlignFrame.copiedHiddenColumns.addElement(new int[]\r
+ {region[0],\r
+ region[1]});\r
+ }\r
+ }\r
+ }\r
+\r
+ public void update(Graphics g)\r
+ {\r
+ paint(g);\r
+ }\r
+\r
+ public void paint(Graphics g)\r
+ {\r
+ int w = getSize().width;\r
+ if (image == null || w != image.getWidth(this))\r
+ {\r
+ image = createImage(w, ap.annotationPanel.getSize().height);\r
+ }\r
+\r
+ drawComponent(image.getGraphics(), w);\r
+ g.drawImage(image, 0, 0, this);\r
+ }\r
+\r
+ public void drawComponent(Graphics g, int width)\r
+ {\r
+ g.setFont(av.getFont());\r
+ FontMetrics fm = g.getFontMetrics(av.getFont());\r
+ g.setColor(Color.white);\r
+ g.fillRect(0, 0, getSize().width, getSize().height);\r
+\r
+ g.translate(0, scrollOffset);\r
+ g.setColor(Color.black);\r
+\r
+ AlignmentAnnotation[] aa = av.alignment.getAlignmentAnnotation();\r
+ int y = g.getFont().getSize();\r
+ int x = 0;\r
+\r
+ if (aa != null)\r
+ {\r
+ for (int i = 0; i < aa.length; i++)\r
+ {\r
+ if (!aa[i].visible)\r
+ {\r
+ continue;\r
+ }\r
+\r
+ x = width - fm.stringWidth(aa[i].label) - 3;\r
+\r
+ if (aa[i].graph > 0)\r
+ {\r
+ y += (aa[i].height / 3);\r
+ }\r
+\r
+ g.drawString(aa[i].label, x, y);\r
+\r
+ if (aa[i].graph > 0)\r
+ {\r
+ y += (2 * aa[i].height / 3);\r
+ }\r
+ else\r
+ {\r
+ y += aa[i].height;\r
+ }\r
+ }\r
+ }\r
}\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff