Start merging of Laurens Code

[jalview.git] / src / jalview / appletgui / AppletJmol.java

diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java
index 0ff2467..d8b58fd 100644 (file)
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -71,6 +71,8 @@ public class AppletJmol extends EmbmenuFrame implements
   MenuItem turn = new MenuItem("Turn Propensity");
 
   MenuItem buried = new MenuItem("Buried Index");
+  
+  MenuItem purinepyrimidine = new MenuItem("Purine/Pyrimidine");
 
   MenuItem user = new MenuItem("User Defined Colours");
 
@@ -187,6 +189,7 @@ public class AppletJmol extends EmbmenuFrame implements
     strand.addActionListener(this);
     turn.addActionListener(this);
     buried.addActionListener(this);
+    purinepyrimidine.addActionListener(this);
     user.addActionListener(this);
     
     jmolHelp.addActionListener(this);
@@ -201,6 +204,7 @@ public class AppletJmol extends EmbmenuFrame implements
     coloursMenu.add(strand);
     coloursMenu.add(turn);
     coloursMenu.add(buried);
+    coloursMenu.add(purinepyrimidine);
     coloursMenu.add(user);
     coloursMenu.add(jmolColour);
     helpMenu.add(jmolHelp);
@@ -444,6 +448,10 @@ public class AppletJmol extends EmbmenuFrame implements
       setEnabled(buried);
       jmb.setJalviewColourScheme(new BuriedColourScheme());
     }
+    else if(evt.getSource() == purinepyrimidine)
+    {
+       jmb.setJalviewColourScheme(new PurinePyrimidineColourScheme());
+    }
     else if (evt.getSource() == user)
     {
       setEnabled(user);