try
{
tcf = new TCoffeeScoreFile(textarea.getText(),
- jalview.io.AppletFormatAdapter.PASTE);
+ AppletFormatAdapter.PASTE);
if (tcf.isValid())
{
if (tcf.annotateAlignment(alignFrame.viewport.getAlignment(),
if (tcf == null)
{
if (new AnnotationFile().annotateAlignmentView(alignFrame.viewport,
- textarea.getText(),
- jalview.io.AppletFormatAdapter.PASTE))
+ textarea.getText(), AppletFormatAdapter.PASTE))
{
alignFrame.alignPanel.fontChanged();
alignFrame.alignPanel.setScrollValues(0, 0);
else
{
if (!alignFrame.parseFeaturesFile(textarea.getText(),
- jalview.io.AppletFormatAdapter.PASTE))
+ AppletFormatAdapter.PASTE))
{
alignFrame.statusBar
.setText(MessageManager
if (alignFrame.alignPanel.av.applet.jmolAvailable)
{
- new jalview.appletgui.AppletJmol(pdb, new SequenceI[]
+ new AppletJmol(pdb, new SequenceI[]
{ seq }, null, alignFrame.alignPanel, AppletFormatAdapter.PASTE);
}
else