sequence is char []

[jalview.git] / src / jalview / appletgui / FeatureRenderer.java

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index a24525e..47fbb0d 100755 (executable)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -293,7 +293,7 @@ public class FeatureRenderer
 \r
           for (i = fstart; i <= fend; i++)\r
           {\r
-            s = seq.getSequence().charAt(i);\r
+            s = seq.getCharAt(i);\r
 \r
             if (jalview.util.Comparison.isGap(s))\r
             {\r
@@ -412,10 +412,10 @@ public class FeatureRenderer
   {\r
     void setTransparency(Graphics g, float value)\r
     {\r
-     Graphics2D g2 = (Graphics2D) g;\r
+    /* Graphics2D g2 = (Graphics2D) g;\r
      g2.setComposite(\r
         AlphaComposite.getInstance(\r
-             AlphaComposite.SRC_OVER, value));\r
+             AlphaComposite.SRC_OVER, value));*/\r
     }\r
   }\r
 \r