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Use paintAlignment
[jalview.git] / src / jalview / appletgui / FeatureSettings.java
diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 9e40b1a..bb1394a 100755 (executable)
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -476,7 +476,7 @@ public class FeatureSettings
     fr.setColour(feature, col);\r
     featurePanel.removeAll();\r
     resetTable(false);\r
-    ap.repaint();\r
+    ap.paintAlignment(true);\r
   }\r
 \r
   public void mouseEntered(MouseEvent evt)\r