sequences are private in SequenceGroup

[jalview.git] / src / jalview / appletgui / Finder.java

diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java
index 570241d..47b756d 100755 (executable)
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -143,7 +143,7 @@ public class Finder extends Panel implements ActionListener
       int res = Integer.parseInt(searchString);\r
       found = true;\r
 \r
-      if (av.getSelectionGroup() == null || av.getSelectionGroup().getSize() < 1)\r
+      if (av.getSelectionGroup() == null || av.getSelectionGroup().getSize(false) < 1)\r
       {\r
         seq = (Sequence) av.getAlignment().getSequenceAt(0);\r
       }\r
@@ -166,7 +166,7 @@ public class Finder extends Panel implements ActionListener
     SequenceGroup selection = av.getSelectionGroup();\r
     if (selection != null)\r
     {\r
-      if (selection.getSize() < 1 ||\r
+      if (selection.getSize(false) < 1 ||\r
           (selection.getEndRes() - selection.getStartRes() < 2))\r
       {\r
         selection = null;\r
@@ -178,7 +178,7 @@ public class Finder extends Panel implements ActionListener
 \r
       seq = (Sequence) av.alignment.getSequenceAt(seqIndex);\r
 \r
-      if (selection != null && !selection.sequences.contains(seq))\r
+      if (selection != null && !selection.getSequences(false).contains(seq))\r
       {\r
         seqIndex++;\r
         resIndex = 0;\r