/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
+ * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
- *
+ *
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
- *
+ *
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
*/
-
package jalview.appletgui;
import java.awt.*;
import jalview.datamodel.*;
-public class IdCanvas
- extends Panel
+public class IdCanvas extends Panel
{
protected AlignViewport av;
protected boolean showScores = true;
protected int maxIdLength = -1;
+
protected String maxIdStr = null;
+
Image image;
+
Graphics gg;
+
int imgHeight = 0;
+
boolean fastPaint = false;
java.util.Vector searchResults;
}
public void drawIdString(Graphics gg, SequenceI s, int i, int starty,
- int ypos)
+ int ypos)
{
int charHeight = av.getCharHeight();
if (searchResults != null && searchResults.contains(s))
{
gg.setColor(Color.black);
- gg.fillRect(0, ( (i - starty) * charHeight) + ypos,
- getSize().width, charHeight);
+ gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width,
+ charHeight);
gg.setColor(Color.white);
}
- else if (av.getSelectionGroup() != null &&
- av.getSelectionGroup().getSequences(null).contains(s))
+ else if (av.getSelectionGroup() != null
+ && av.getSelectionGroup().getSequences(null).contains(s))
{
gg.setColor(Color.lightGray);
- gg.fillRect(0, ( (i - starty) * charHeight) + ypos,
- getSize().width, charHeight);
+ gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width,
+ charHeight);
gg.setColor(Color.white);
}
else
{
gg.setColor(av.getSequenceColour(s));
- gg.fillRect(0, ( (i - starty) * charHeight) + ypos,
- getSize().width, charHeight);
+ gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width,
+ charHeight);
gg.setColor(Color.black);
}
gg.drawString(s.getDisplayId(av.getShowJVSuffix()), 0,
- ( (i - starty) * charHeight) + ypos +
- charHeight - (charHeight / 5));
+ ((i - starty) * charHeight) + ypos + charHeight
+ - (charHeight / 5));
if (av.hasHiddenRows && av.showHiddenMarkers)
{
return;
}
- gg.copyArea(0, 0, getSize().width, imgHeight, 0, -vertical * av.charHeight);
+ gg.copyArea(0, 0, getSize().width, imgHeight, 0, -vertical
+ * av.charHeight);
int ss = av.startSeq, es = av.endSeq, transY = 0;
if (vertical > 0) // scroll down
gg.setFont(av.getFont());
}
- //Fill in the background
+ // Fill in the background
gg.setColor(Color.white);
- Font italic = new Font(av.getFont().getName(), Font.ITALIC,
- av.getFont().getSize());
+ Font italic = new Font(av.getFont().getName(), Font.ITALIC, av
+ .getFont().getSize());
gg.setFont(italic);
gg.fillRect(0, 0, getSize().width, getSize().height);
drawIds(av.startSeq, av.endSeq);
g.drawImage(image, 0, 0, this);
}
-
+
void drawIds(int starty, int endy)
{
- Font italic = new Font(av.getFont().getName(), Font.ITALIC,
- av.getFont().getSize());
+ Font italic = new Font(av.getFont().getName(), Font.ITALIC, av
+ .getFont().getSize());
gg.setFont(italic);
hgap += av.charHeight;
}
- int cHeight = alheight * av.charHeight
- + hgap
- + annotationHeight;
+ int cHeight = alheight * av.charHeight + hgap + annotationHeight;
int rowSize = av.getEndRes() - av.getStartRes();
// Draw the rest of the panels
- for (int ypos = hgap, row = av.startRes;
- (ypos <= getSize().height) && (row < maxwidth);
- ypos += cHeight, row += rowSize)
+ for (int ypos = hgap, row = av.startRes; (ypos <= getSize().height)
+ && (row < maxwidth); ypos += cHeight, row += rowSize)
{
for (int i = starty; i < alheight; i++)
{
}
else
{
- //Now draw the id strings
+ // Now draw the id strings
SequenceI seq;
for (int i = starty; i < endy; i++)
{
continue;
}
gg.setFont(italic);
- //boolean isrep=false;
+ // boolean isrep=false;
if (av.hasHiddenRows)
{
- //isrep =
+ // isrep =
setHiddenFont(seq);
}
// Selected sequence colours
- if ( (searchResults != null) &&
- searchResults.contains(seq))
+ if ((searchResults != null) && searchResults.contains(seq))
{
currentColor = Color.black;
currentTextColor = Color.white;
}
- else if ( (av.getSelectionGroup() != null) &&
- av.getSelectionGroup().getSequences(null).contains(seq))
+ else if ((av.getSelectionGroup() != null)
+ && av.getSelectionGroup().getSequences(null).contains(seq))
{
currentColor = Color.lightGray;
currentTextColor = Color.black;
}
gg.setColor(currentColor);
- // TODO: isrep could be used to highlight the representative in a different way
+ // TODO: isrep could be used to highlight the representative in a
+ // different way
gg.fillRect(0, (i - starty) * av.charHeight, getSize().width,
- av.charHeight);
+ av.charHeight);
gg.setColor(currentTextColor);
- gg.drawString(seq.getDisplayId(av.getShowJVSuffix()),
- 0,
- ( ( (i - starty) * av.charHeight) + av.charHeight) -
- (av.charHeight / 5));
+ gg.drawString(seq.getDisplayId(av.getShowJVSuffix()), 0,
+ (((i - starty) * av.charHeight) + av.charHeight)
+ - (av.charHeight / 5));
if (av.hasHiddenRows && av.showHiddenMarkers)
{
void drawMarker(int i, int starty, int yoffset)
{
SequenceI[] hseqs = av.alignment.getHiddenSequences().hiddenSequences;
- //Use this method here instead of calling hiddenSeq adjust
- //3 times.
+ // Use this method here instead of calling hiddenSeq adjust
+ // 3 times.
int hSize = hseqs.length;
int hiddenIndex = i;
int lastIndex = i - 1;
int nextIndex = i + 1;
-
for (int j = 0; j < hSize; j++)
{
if (hseqs[j] != null)
if (below)
{
gg.fillPolygon(new int[]
- {getSize().width - av.charHeight,
- getSize().width - av.charHeight,
- getSize().width},
- new int[]
- {
- (i - starty) * av.charHeight + yoffset,
- (i - starty) * av.charHeight + yoffset + av.charHeight / 4,
- (i - starty) * av.charHeight + yoffset
- }, 3);
+ { getSize().width - av.charHeight, getSize().width - av.charHeight,
+ getSize().width }, new int[]
+ { (i - starty) * av.charHeight + yoffset,
+ (i - starty) * av.charHeight + yoffset + av.charHeight / 4,
+ (i - starty) * av.charHeight + yoffset }, 3);
}
if (above)
{
gg.fillPolygon(new int[]
- {getSize().width - av.charHeight,
- getSize().width - av.charHeight,
- getSize().width},
- new int[]
- {
- (i - starty + 1) * av.charHeight + yoffset,
- (i - starty + 1) * av.charHeight + yoffset -
- av.charHeight / 4,
- (i - starty + 1) * av.charHeight + yoffset
- }, 3);
+ { getSize().width - av.charHeight, getSize().width - av.charHeight,
+ getSize().width }, new int[]
+ { (i - starty + 1) * av.charHeight + yoffset,
+ (i - starty + 1) * av.charHeight + yoffset - av.charHeight / 4,
+ (i - starty + 1) * av.charHeight + yoffset }, 3);
}
}
+
boolean setHiddenFont(SequenceI seq)
{
- Font bold = new Font(av.getFont().getName(), Font.BOLD
- ,
- av.getFont().getSize());
+ Font bold = new Font(av.getFont().getName(), Font.BOLD, av.getFont()
+ .getSize());
- if (av.hiddenRepSequences != null &&
- av.hiddenRepSequences.containsKey(seq))
+ if (av.hiddenRepSequences != null
+ && av.hiddenRepSequences.containsKey(seq))
{
gg.setFont(bold);
return true;
git://source.jalview.org / jalview.git / blobdiff