JAL-2388 Hidden cols separated from column selection (almost complete)

[jalview.git] / src / jalview / appletgui / OverviewPanel.java

diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index 3ef2936..eaeafef 100755 (executable)
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -144,7 +144,7 @@ public class OverviewPanel extends Panel implements Runnable,
   private void mouseAction(MouseEvent evt)
   {
     od.updateViewportFromMouse(evt.getX(), evt.getY(), av.getAlignment()
-            .getHiddenSequences(), av.getColumnSelection(), av
+            .getHiddenSequences(), av.getAlignment().getHiddenColumns(), av
             .getRanges());
     ap.setScrollValues(od.getScrollCol(), od.getScrollRow());
     ap.paintAlignment(false);
@@ -319,7 +319,7 @@ public class OverviewPanel extends Panel implements Runnable,
     }
 
     if (hiddenRow
-            || (hasHiddenCols && !av.getColumnSelection()
+            || (hasHiddenCols && !av.getAlignment().getHiddenColumns()
                     .isVisible(lastcol)))
     {
       color = color.darker().darker();
@@ -335,7 +335,8 @@ public class OverviewPanel extends Panel implements Runnable,
   public void setBoxPosition()
   {
     od.setBoxPosition(av.getAlignment()
-            .getHiddenSequences(), av.getColumnSelection(), av.getRanges());
+.getHiddenSequences(), av
+            .getAlignment().getHiddenColumns(), av.getRanges());
     repaint();
   }