float scores[][] = new float[seqs.length][seqs.length];
double totscore = 0;
- int count = ap.av.getSelectionGroup().getSize(false);
+ int count = ap.av.getSelectionGroup().getSize();
String type=(ap.av.alignment.isNucleotide()) ? AlignSeq.DNA : AlignSeq.PEP;
Sequence seq;