i18n

[jalview.git] / src / jalview / appletgui / RedundancyPanel.java

diff --git a/src/jalview/appletgui/RedundancyPanel.java b/src/jalview/appletgui/RedundancyPanel.java
old mode 100755 (executable)
new mode 100644 (file)
index b420758..d91e53b
--- a/src/jalview/appletgui/RedundancyPanel.java
+++ b/src/jalview/appletgui/RedundancyPanel.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -25,6 +25,7 @@ import java.awt.event.*;
 import jalview.analysis.AlignSeq;
 import jalview.commands.*;
 import jalview.datamodel.*;
+import jalview.util.MessageManager;
 
 public class RedundancyPanel extends SliderPanel implements Runnable,
         WindowListener
@@ -49,7 +50,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
     applyButton.setVisible(true);
     allGroupsCheck.setVisible(false);
 
-    label.setText("Enter the redundancy threshold");
+    label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
     valueField.setText("100");
 
     slider.setVisibleAmount(1);
@@ -69,7 +70,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
     frame = new Frame();
     frame.add(this);
     jalview.bin.JalviewLite.addFrame(frame,
-            "Redundancy threshold selection", 400, 100);
+            MessageManager.getString("label.redundancy_threshold_selection"), 400, 100);
 
     frame.addWindowListener(this);
 
@@ -91,7 +92,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
    */
   public void run()
   {
-    label.setText("Calculating....");
+    label.setText(MessageManager.getString("label.calculating"));
 
     slider.setVisible(false);
     applyButton.setEnabled(false);
@@ -121,8 +122,9 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
 
     height = originalSequences.length;
 
-    redundancy = AlignSeq.computeRedundancyMatrix(originalSequences, omitHidden, start, end, false);
-    label.setText("Enter the redundancy threshold");
+    redundancy = AlignSeq.computeRedundancyMatrix(originalSequences,
+            omitHidden, start, end, false);
+    label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
     slider.setVisible(true);
     applyButton.setEnabled(true);
     valueField.setVisible(true);
@@ -193,11 +195,10 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
 
       EditCommand cut = new EditCommand("Remove Redundancy",
               EditCommand.CUT, deleted, 0, width, ap.av.getAlignment());
-      AlignmentI alignment=ap.av.getAlignment();
+      AlignmentI alignment = ap.av.getAlignment();
       for (int i = 0; i < del.size(); i++)
       {
         alignment.deleteSequence(deleted[i]);
-        PaintRefresher.Refresh(this, ap.av.getSequenceSetId(), true, true);
         if (sg != null)
         {
           sg.deleteSequence(deleted[i], false);
@@ -208,8 +209,9 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
 
       ap.alignFrame.addHistoryItem(cut);
 
-      ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
-              .getSequences());
+      PaintRefresher.Refresh(this, ap.av.getSequenceSetId(), true, true);
+      // ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
+      // .getSequences());
     }
 
   }