/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
-import java.awt.*;
-import java.awt.event.*;
-
-import jalview.datamodel.*;
+import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.SequenceGroup;
+import jalview.util.MessageManager;
+
+import java.awt.Color;
+import java.awt.FontMetrics;
+import java.awt.Graphics;
+import java.awt.MenuItem;
+import java.awt.Panel;
+import java.awt.PopupMenu;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.InputEvent;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.MouseMotionListener;
public class ScalePanel extends Panel implements MouseMotionListener,
MouseListener
int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();
final int res;
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(x);
}
PopupMenu pop = new PopupMenu();
if (reveal != null)
{
- MenuItem item = new MenuItem("Reveal");
+ MenuItem item = new MenuItem(
+ MessageManager.getString("label.reveal"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
});
pop.add(item);
- if (av.getColumnSelection().getHiddenColumns().size() > 1)
+ if (av.getColumnSelection().hasManyHiddenColumns())
{
- item = new MenuItem("Reveal All");
+ item = new MenuItem(MessageManager.getString("action.reveal_all"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
else if (av.getColumnSelection().contains(res))
{
- MenuItem item = new MenuItem("Hide Columns");
+ MenuItem item = new MenuItem(
+ MessageManager.getString("label.hide_columns"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
av.hideColumns(res, res);
if (av.getSelectionGroup() != null
- && av.getSelectionGroup().getSize() == av.alignment
- .getHeight())
+ && av.getSelectionGroup().getSize() == av
+ .getAlignment().getHeight())
{
av.setSelectionGroup(null);
}
av.getColumnSelection().addElement(res);
SequenceGroup sg = new SequenceGroup();
- for (int i = 0; i < av.alignment.getSequences().size(); i++)
+ for (int i = 0; i < av.getAlignment().getSequences().size(); i++)
{
- sg.addSequence(av.alignment.getSequenceAt(i), false);
+ sg.addSequence(av.getAlignment().getSequenceAt(i), false);
}
sg.setStartRes(res);
}
ap.paintAlignment(true);
+ av.sendSelection();
}
public void mouseReleased(MouseEvent evt)
int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
- if (res > av.alignment.getWidth())
+ if (res > av.getAlignment().getWidth())
{
- res = av.alignment.getWidth() - 1;
+ res = av.getAlignment().getWidth() - 1;
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(res);
}
stretchingGroup = false;
ap.paintAlignment(false);
+ av.sendSelection();
}
public void mouseDragged(MouseEvent evt)
res = 0;
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(res);
}
- if (res > av.alignment.getWidth())
+ if (res > av.getAlignment().getWidth())
{
- res = av.alignment.getWidth() - 1;
+ res = av.getAlignment().getWidth() - 1;
}
if (res < min)
public void mouseMoved(MouseEvent evt)
{
- if (!av.hasHiddenColumns)
+ if (!av.hasHiddenColumns())
{
return;
}
res = av.getColumnSelection().adjustForHiddenColumns(res);
reveal = null;
- for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size(); i++)
+ for (int[] region : av.getColumnSelection().getHiddenColumns())
{
- int[] region = (int[]) av.getColumnSelection().getHiddenColumns()
- .elementAt(i);
if (res + 1 == region[0] || res - 1 == region[1])
{
reveal = region;
int height)
{
gg.setFont(av.getFont());
-
// Fill in the background
gg.setColor(Color.white);
gg.fillRect(0, 0, width, height);
// Fill the selected columns
ColumnSelection cs = av.getColumnSelection();
gg.setColor(new Color(220, 0, 0));
-
+ int avcharWidth = av.getCharWidth(), avcharHeight = av.getCharHeight();
for (int i = 0; i < cs.size(); i++)
{
int sel = cs.columnAt(i);
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
sel = av.getColumnSelection().findColumnPosition(sel);
}
if ((sel >= startx) && (sel <= endx))
{
- gg.fillRect((sel - startx) * av.charWidth, 0, av.charWidth,
+ gg.fillRect((sel - startx) * avcharWidth, 0, avcharWidth,
getSize().height);
}
}
int scalestartx = (startx / 10) * 10;
FontMetrics fm = gg.getFontMetrics(av.getFont());
- int y = av.charHeight - fm.getDescent();
+ int y = avcharHeight - fm.getDescent();
if ((scalestartx % 10) == 0)
{
{
string = String.valueOf(av.getColumnSelection()
.adjustForHiddenColumns(i));
- if ((i - startx - 1) * av.charWidth > maxX)
+ if ((i - startx - 1) * avcharWidth > maxX)
{
- gg.drawString(string, (i - startx - 1) * av.charWidth, y);
- maxX = (i - startx + 1) * av.charWidth + fm.stringWidth(string);
+ gg.drawString(string, (i - startx - 1) * avcharWidth, y);
+ maxX = (i - startx + 1) * avcharWidth + fm.stringWidth(string);
}
- gg
- .drawLine(
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + 2,
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + (fm.getDescent() * 2));
+ gg.drawLine(
+((i - startx - 1) * avcharWidth) + (avcharWidth / 2),
+ y + 2,
+ ((i - startx - 1) * avcharWidth) + (avcharWidth / 2),
+ y + (fm.getDescent() * 2));
}
else
{
- gg
- .drawLine(
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + fm.getDescent(),
- (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
- y + (fm.getDescent() * 2));
+ gg.drawLine(
+((i - startx - 1) * avcharWidth) + (avcharWidth / 2),
+ y + fm.getDescent(),
+ ((i - startx - 1) * avcharWidth)
+ + (avcharWidth / 2),
+ y + (fm.getDescent() * 2));
}
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
gg.setColor(Color.blue);
int res;
}
gg.fillPolygon(new int[]
- { res * av.charWidth - av.charHeight / 4,
- res * av.charWidth + av.charHeight / 4, res * av.charWidth },
+ { res * avcharWidth - avcharHeight / 4,
+ res * avcharWidth + avcharHeight / 4, res * avcharWidth },
new int[]
- { y - av.charHeight / 2, y - av.charHeight / 2, y + 8 },
+ { y - avcharHeight / 2, y - avcharHeight / 2, y + 8 },
3);
}
if (reveal != null && reveal[0] > startx && reveal[0] < endx)
{
- gg.drawString("Reveal Columns", reveal[0] * av.charWidth, 0);
+ gg.drawString(MessageManager.getString("label.reveal_columns"),
+ reveal[0] * avcharWidth, 0);
}
}
git://source.jalview.org / jalview.git / blobdiff