Amend features/annotations in applet

[jalview.git] / src / jalview / appletgui / ScalePanel.java

diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java
index b35fa6c..4db8054 100755 (executable)
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -259,15 +259,18 @@ public class ScalePanel
         sg.setStartRes(res);\r
       }\r
 \r
+      int col;\r
       for (int i = min; i <= max; i++)\r
       {\r
-        if ( (i < sg.getStartRes()) || (i > sg.getEndRes()))\r
+        col = av.getColumnSelection().adjustForHiddenColumns(i);\r
+\r
+        if ( (col < sg.getStartRes()) || (col > sg.getEndRes()))\r
         {\r
-          av.getColumnSelection().removeElement(i);\r
+          av.getColumnSelection().removeElement(col);\r
         }\r
         else\r
         {\r
-          av.getColumnSelection().addElement(i);\r
+          av.getColumnSelection().addElement(col);\r
         }\r
       }\r
 \r