JAL-2189 source formatting

[jalview.git] / src / jalview / appletgui / ScalePanel.java

diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java
index 3c6a4f1..5a156fa 100755 (executable)
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -22,6 +22,8 @@ package jalview.appletgui;
 
 import jalview.datamodel.ColumnSelection;
 import jalview.datamodel.SequenceGroup;
+import jalview.renderer.ScaleRenderer;
+import jalview.renderer.ScaleRenderer.ScaleMark;
 import jalview.util.MessageManager;
 
 import java.awt.Color;
@@ -36,6 +38,7 @@ import java.awt.event.InputEvent;
 import java.awt.event.MouseEvent;
 import java.awt.event.MouseListener;
 import java.awt.event.MouseMotionListener;
+import java.util.List;
 
 public class ScalePanel extends Panel implements MouseMotionListener,
         MouseListener
@@ -149,8 +152,7 @@ public class ScalePanel extends Panel implements MouseMotionListener,
     PopupMenu pop = new PopupMenu();
     if (reveal != null)
     {
-      MenuItem item = new MenuItem(
-              MessageManager.getString("label.reveal"));
+      MenuItem item = new MenuItem(MessageManager.getString("label.reveal"));
       item.addActionListener(new ActionListener()
       {
         @Override
@@ -202,8 +204,8 @@ public class ScalePanel extends Panel implements MouseMotionListener,
         {
           av.hideColumns(res, res);
           if (av.getSelectionGroup() != null
-                  && av.getSelectionGroup().getSize() == av
-                          .getAlignment().getHeight())
+                  && av.getSelectionGroup().getSize() == av.getAlignment()
+                          .getHeight())
           {
             av.setSelectionGroup(null);
           }
@@ -406,61 +408,69 @@ public class ScalePanel extends Panel implements MouseMotionListener,
 
     // Fill the selected columns
     ColumnSelection cs = av.getColumnSelection();
-    gg.setColor(new Color(220, 0, 0));
-    int avcharWidth = av.getCharWidth(), avcharHeight = av.getCharHeight();
-    for (int sel : cs.getSelected())
+    int avCharWidth = av.getCharWidth();
+    int avcharHeight = av.getCharHeight();
+    if (cs != null)
     {
-      if (av.hasHiddenColumns())
+      gg.setColor(new Color(220, 0, 0));
+      boolean hasHiddenColumns = cs.hasHiddenColumns();
+      for (int sel : cs.getSelected())
       {
-        sel = av.getColumnSelection().findColumnPosition(sel);
-      }
+        // TODO: JAL-2001 - provide a fast method to list visible selected in a
+        // given range
+        if (hasHiddenColumns)
+        {
+          if (cs.isVisible(sel))
+          {
+            sel = cs.findColumnPosition(sel);
+          }
+          else
+          {
+            continue;
+          }
+        }
 
-      if ((sel >= startx) && (sel <= endx))
-      {
-        gg.fillRect((sel - startx) * avcharWidth, 0, avcharWidth,
-                getSize().height);
+        if ((sel >= startx) && (sel <= endx))
+        {
+          gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth,
+                  getSize().height);
+        }
       }
     }
 
     // Draw the scale numbers
     gg.setColor(Color.black);
 
-    int scalestartx = (startx / 10) * 10;
-
-    FontMetrics fm = gg.getFontMetrics(av.getFont());
-    int y = avcharHeight - fm.getDescent();
-
-    if ((scalestartx % 10) == 0)
-    {
-      scalestartx += 5;
-    }
-
-    String string;
     int maxX = 0;
+    List<ScaleMark> marks = new ScaleRenderer().calculateMarks(av, startx,
+            endx);
 
-    for (int i = scalestartx; i < endx; i += 5)
+    FontMetrics fm = gg.getFontMetrics(av.getFont());
+    int y = avcharHeight;
+    int yOf = fm.getDescent();
+    y -= yOf;
+    for (ScaleMark mark : marks)
     {
-      if ((i % 10) == 0)
+      boolean major = mark.major;
+      int mpos = mark.column; // (i - startx - 1)
+      String mstring = mark.text;
+      if (mstring != null)
       {
-        string = String.valueOf(av.getColumnSelection()
-                .adjustForHiddenColumns(i));
-        if ((i - startx - 1) * avcharWidth > maxX)
+        if (mpos * avCharWidth > maxX)
         {
-          gg.drawString(string, (i - startx - 1) * avcharWidth, y);
-          maxX = (i - startx + 1) * avcharWidth + fm.stringWidth(string);
+          gg.drawString(mstring, mpos * avCharWidth, y);
+          maxX = (mpos + 2) * avCharWidth + fm.stringWidth(mstring);
         }
-
-        gg.drawLine(((i - startx - 1) * avcharWidth) + (avcharWidth / 2),
-                y + 2,
-                ((i - startx - 1) * avcharWidth) + (avcharWidth / 2), y
-                        + (fm.getDescent() * 2));
-
+      }
+      if (major)
+      {
+        gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + 2,
+                (mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2));
       }
       else
       {
-        gg.drawLine(((i - startx - 1) * avcharWidth) + (avcharWidth / 2), y
-                + fm.getDescent(), ((i - startx - 1) * avcharWidth)
-                + (avcharWidth / 2), y + (fm.getDescent() * 2));
+        gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + yOf,
+                (mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2));
       }
     }
 
@@ -470,33 +480,24 @@ public class ScalePanel extends Panel implements MouseMotionListener,
       int res;
       if (av.getShowHiddenMarkers())
       {
-        for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
-                .size(); i++)
+        int widthx = 1 + endx - startx;
+        for (int i = 0; i < cs.getHiddenColumns().size(); i++)
         {
 
-          res = av.getColumnSelection().findHiddenRegionPosition(i)
-                  - startx;
+          res = cs.findHiddenRegionPosition(i) - startx;
 
-          if (res < 0 || res > endx - scalestartx)
+          if (res < 0 || res > widthx)
           {
             continue;
           }
 
-          gg.fillPolygon(new int[] { res * avcharWidth - avcharHeight / 4,
-              res * avcharWidth + avcharHeight / 4, res * avcharWidth },
-                  new int[] { y - avcharHeight / 2, y - avcharHeight / 2,
-                      y + 8 }, 3);
-
+          gg.fillPolygon(new int[] {
+              -1 + res * avCharWidth - avcharHeight / 4,
+              -1 + res * avCharWidth + avcharHeight / 4,
+              -1 + res * avCharWidth }, new int[] { y, y, y + 2 * yOf }, 3);
         }
       }
-
-      if (reveal != null && reveal[0] > startx && reveal[0] < endx)
-      {
-        gg.drawString(MessageManager.getString("label.reveal_columns"),
-                reveal[0] * avcharWidth, 0);
-      }
     }
-
   }
 
 }