sg.addSequence(sequence, false);
av.setSelectionGroup(sg);
}
- ap.paintAlignment(false);
+ ap.paintAlignment(false, false);
av.sendSelection();
}
lastMousePress = evt.getPoint();
- ap.paintAlignment(false);
+ ap.paintAlignment(false, false);
ap.annotationPanel.image = null;
return;
}
{
if (links == null)
{
- links = new Vector<String>();
+ links = new Vector<>();
}
links.addAll(sf.links);
}
}
}
PaintRefresher.Refresh(ap, av.getSequenceSetId());
- ap.paintAlignment(needOverviewUpdate);
+ ap.paintAlignment(needOverviewUpdate, needOverviewUpdate);
needOverviewUpdate = false;
changeEndRes = false;
changeStartRes = false;