boxes, colour text, show text added to groups

[jalview.git] / src / jalview / appletgui / SequenceRenderer.java

diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java
index a13b643..ea857cb 100755 (executable)
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -66,6 +66,8 @@ public class SequenceRenderer
       {\r
         if( currentSequenceGroup.getDisplayBoxes())\r
              getBoxColour(currentSequenceGroup.cs, seq, i);\r
+        else\r
+             resBoxColour = Color.white;\r
       }\r
       else if(av.getShowBoxes())\r
             getBoxColour(av.getGlobalColourScheme(), seq, i);\r
@@ -101,7 +103,6 @@ public class SequenceRenderer
     char s;\r
     // Need to find the sequence position here.\r
 \r
-    graphics.setColor(Color.black);\r
     String sequence  = seq.getSequence();\r
     for (int i = start; i <= end; i++)\r
     {\r
@@ -138,6 +139,8 @@ public class SequenceRenderer
             else\r
               graphics.setColor(resBoxColour);\r
            }\r
+           else\r
+             graphics.setColor(Color.black);\r
         }\r
 \r
           charOffset =  (width - fm.charWidth(s))/2;\r