formatting

[jalview.git] / src / jalview / appletgui / TreeCanvas.java

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index ca78bda..217217e 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -65,6 +65,7 @@ public class TreeCanvas extends Panel implements MouseListener,
   SequenceNode highlightNode;
 
   AlignmentPanel ap;
+
   public TreeCanvas(AlignmentPanel ap, ScrollPane scroller)
   {
     this.ap = ap;
@@ -199,8 +200,7 @@ public class TreeCanvas extends Panel implements MouseListener,
       // Colour selected leaves differently
       SequenceGroup selected = av.getSelectionGroup();
       if (selected != null
-              && selected.getSequences(null).contains(
-                      node.element()))
+              && selected.getSequences(null).contains(node.element()))
       {
         g.setColor(Color.gray);
 
@@ -442,8 +442,7 @@ public class TreeCanvas extends Panel implements MouseListener,
     // for
     // scrollbar
 
-    float wscale = (width - labelLength - offx * 2)
-            / tree.getMaxHeight();
+    float wscale = (width - labelLength - offx * 2) / tree.getMaxHeight();
 
     SequenceNode top = tree.getTopNode();
 
@@ -467,8 +466,7 @@ public class TreeCanvas extends Panel implements MouseListener,
         g.setColor(Color.gray);
       }
 
-      int x = (int) (threshold
-              * (getSize().width - labelLength - 2 * offx) + offx);
+      int x = (int) (threshold * (getSize().width - labelLength - 2 * offx) + offx);
 
       g.drawLine(x, 0, x, getSize().height);
     }
@@ -631,19 +629,20 @@ public class TreeCanvas extends Panel implements MouseListener,
         }
         else
         {
-          cs = ColourSchemeProperty.getColour(sg, ColourSchemeProperty.getColourName(av
-                  .getGlobalColourScheme()));
+          cs = ColourSchemeProperty.getColour(sg, ColourSchemeProperty
+                  .getColourName(av.getGlobalColourScheme()));
         }
         // cs is null if shading is an annotationColourGradient
-        if (cs!=null)
+        if (cs != null)
         {
           cs.setThreshold(av.getGlobalColourScheme().getThreshold(),
                   av.getIgnoreGapsConsensus());
         }
       }
-      // TODO: cs used to be initialized with a sequence collection and recalcConservation called automatically
+      // TODO: cs used to be initialized with a sequence collection and
+      // recalcConservation called automatically
       // instead we set it manually - recalc called after updateAnnotation
-      sg.cs=cs;
+      sg.cs = cs;
 
       sg.setName("JTreeGroup:" + sg.hashCode());
       sg.setIdColour(col);