// Colour selected leaves differently\r
SequenceGroup selected = av.getSelectionGroup();\r
if (selected != null &&\r
- selected.getSequences(false).contains( (SequenceI) node.element()))\r
+ selected.getSequences(null).contains( (SequenceI) node.element()))\r
{\r
g.setColor(Color.gray);\r
\r
av.getIgnoreGapsConsensus());\r
}\r
\r
- SequenceGroup sg = new SequenceGroup(sequences, "TreeGroup",\r
+ SequenceGroup sg = new SequenceGroup(sequences, "",\r
cs, true, true,\r
false, 0, av.alignment.getWidth()-1);\r
\r
+ sg.setName("JTreeGroup:"+sg.hashCode());\r
+\r
\r
if ( av.getGlobalColourScheme()!=null\r
&& av.getGlobalColourScheme().conservationApplied())\r
{\r
Conservation c = new Conservation("Group",\r
ResidueProperties.propHash, 3,\r
- sg.getSequences(false),\r
+ sg.getSequences(null),\r
sg.getStartRes(),\r
sg.getEndRes());\r
\r