TreeCanvas treeCanvas;
NJTree tree;
+
AlignmentPanel ap;
AlignViewport av;
{
return tree;
}
-
- public void finalize() throws Throwable {
- ap=null;
- av=null;
+
+ public void finalize() throws Throwable
+ {
+ ap = null;
+ av = null;
super.finalize();
}
{
int start, end;
SequenceI[] seqs;
- boolean selview=(av
- .getSelectionGroup() != null) && (av
- .getSelectionGroup().getSize()>1);
+ boolean selview = (av.getSelectionGroup() != null)
+ && (av.getSelectionGroup().getSize() > 1);
AlignmentView seqStrings = av.getAlignmentView(selview);
if (!selview)
{
{
start = av.getSelectionGroup().getStartRes();
end = av.getSelectionGroup().getEndRes() + 1;
- seqs = av.getSelectionGroup().getSequencesInOrder(av.getAlignment());
+ seqs = av.getSelectionGroup().getSequencesInOrder(
+ av.getAlignment());
}
tree = new NJTree(seqs, seqStrings, type, pwtype, start, end);