Use paintAlignment

[jalview.git] / src / jalview / appletgui / UserDefinedColours.java

diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java
index af08b75..de1cff7 100755 (executable)
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -343,12 +343,11 @@ public class UserDefinedColours
         ap.av.setGlobalColourScheme(ucs);\r
       }\r
       ap.seqPanel.seqCanvas.img = null;\r
-      ap.repaint();\r
+      ap.paintAlignment(true);\r
     }\r
     else if (pdbcanvas != null)\r
     {\r
-      pdbcanvas.pdb.setColours(ucs);\r
-      pdbcanvas.updateSeqColours();\r
+      pdbcanvas.setColours(ucs);\r
     }\r
   }\r
 \r
@@ -397,7 +396,7 @@ public class UserDefinedColours
       {\r
         ap.av.setGlobalColourScheme(ucs);\r
       }\r
-      ap.repaint();\r
+      ap.paintAlignment(true);\r
     }\r
     else if (pdbcanvas != null)\r
     {\r