import jalview.bin.ApplicationSingletonProvider.ApplicationSingletonI;
import jalview.datamodel.PDBEntry;
-import jalview.gui.UserDefinedColours;
+import jalview.gui.Preferences;
import jalview.schemes.ColourSchemeLoader;
import jalview.schemes.ColourSchemes;
import jalview.schemes.UserColourScheme;
getDefault("sifts_cache_threshold_in_days",
DEFAULT_CACHE_THRESHOLD_IN_DAYS));
- IdOrgSettings.setUrl(getDefault("ID_ORG_HOSTURL",
+ IdOrgSettings.setUrl(getDefault(Preferences.ID_ORG_HOSTURL,
"http://www.jalview.org/services/identifiers"));
IdOrgSettings.setDownloadLocation(ID_ORG_FILE);
.println("Jalview Version: " + codeVersion + codeInstallation);
StructureImportSettings.setDefaultStructureFileFormat(jalview.bin.Cache
- .getDefault("PDB_DOWNLOAD_FORMAT", PDB_DOWNLOAD_FORMAT));
+ .getDefault(Preferences.PDB_DOWNLOAD_FORMAT, PDB_DOWNLOAD_FORMAT));
StructureImportSettings
.setDefaultPDBFileParser(DEFAULT_PDB_FILE_PARSER);
// StructureImportSettings
setProperty("VERSION", codeVersion);
// LOAD USERDEFINED COLOURS
- initUserColourSchemes(getProperty("USER_DEFINED_COLOURS"));
+ initUserColourSchemes(getProperty(Preferences.USER_DEFINED_COLOURS));
}
private void deleteBuildProperties()
{
if (coloursFound.toString().length() > 1)
{
- setProperty(UserDefinedColours.USER_DEFINED_COLOURS,
+ setProperty(Preferences.USER_DEFINED_COLOURS,
coloursFound.toString());
}
else
{
getInstance().applicationProperties
- .remove(UserDefinedColours.USER_DEFINED_COLOURS);
+ .remove(Preferences.USER_DEFINED_COLOURS);
}
}
}