Merge branch 'features/r2_11_2_alphafold/JAL-629' into merge/big_merge_of_bens_stuff_...

[jalview.git] / src / jalview / bin / Commands.java

diff --git a/src/jalview/bin/Commands.java b/src/jalview/bin/Commands.java
index 63247a7..06684e7 100644 (file)
--- a/src/jalview/bin/Commands.java
+++ b/src/jalview/bin/Commands.java
@@ -799,7 +799,7 @@ public class Commands
 
           case "biojs":
             Console.debug(
-                    "Creating BioJS MSA Viwer HTML file: " + fileName);
+                    "Outputting BioJS MSA Viwer HTML file: " + fileName);
             try
             {
               BioJsHTMLOutput.refreshVersionInfo(
@@ -813,12 +813,12 @@ public class Commands
             break;
 
           case "eps":
-            Console.debug("Creating EPS file: " + fileName);
-            af.createEPS(file, name);
+            Console.debug("Outputting EPS file: " + fileName);
+            af.createEPS(file, renderer);
             break;
 
           case "imagemap":
-            Console.debug("Creating ImageMap file: " + fileName);
+            Console.debug("Outputting ImageMap file: " + fileName);
             af.createImageMap(file, name);
             break;
 
@@ -989,7 +989,7 @@ public class Commands
         seq = al.getSequenceAt(subVals.getIndex());
       }
     }
-    else if (idAv != null)
+    if (seq == null && idAv != null)
     {
       seq = al.findName(idAv.getValue());
     }