private boolean noCalculation, noMenuBar, noStatus;
+ private boolean noAnnotation;
+
public boolean getStartCalculations()
{
return !noCalculation;
return !noStatus;
}
+ public boolean getShowAnnotation()
+ {
+ return !noAnnotation;
+ }
public static AlignFrame getCurrentAlignFrame()
{
System.out.println("CMD [nostatus] executed successfully!");
}
+ if (aparser.contains(ArgsParser.NOANNOTATION)
+ || aparser.contains(ArgsParser.NOANNOTATION2))
+ {
+ noAnnotation = true;
+ System.out.println("CMD no-annotation executed successfully!");
+ }
if (aparser.contains(ArgsParser.NOCALCULATION))
{
noCalculation = true;
System.out.println("CMD [-sortbytree] executed successfully!");
}
}
-
+
boolean doUpdateAnnotation = false;
-
- if (aparser.contains(ArgsParser.NOANNOTATION)
- || aparser.contains(ArgsParser.NOANNOTATION2))
+ /**
+ * we do this earlier in JalviewJS because of a complication with
+ * SHOWOVERVIEW
+ *
+ * For now, just fixing this in JalviewJS.
+ *
+ *
+ * @j2sIgnore
+ *
+ */
{
- af.getViewport().setShowAnnotation(false);
- if (!af.getViewport().isShowAnnotation())
+ if (aparser.contains(ArgsParser.NOANNOTATION)
+ || aparser.contains(ArgsParser.NOANNOTATION2))
{
- doUpdateAnnotation = true;
- System.out.println("CMD no-annotation executed successfully!");
+ af.getViewport().setShowAnnotation(false);
+ if (!af.getViewport().isShowAnnotation())
+ {
+ doUpdateAnnotation = true;
+ System.out
+ .println("CMD no-annotation executed successfully!");
+ }
}
}
if (aparser.contains(ArgsParser.NOSORTBYTREE))