JAL-629 Added linkedId to ArgValuesMap for reference. Updated Arg descriptions. Made...

[jalview.git] / src / jalview / bin / Jalview.java

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 09d83ce..1021a69 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -140,9 +140,9 @@ public class Jalview
 
   private boolean QUIET = false;
 
-  public boolean quiet()
+  public static boolean quiet()
   {
-    return QUIET;
+    return Jalview.getInstance() != null && Jalview.getInstance().QUIET;
   }
 
   static
@@ -490,7 +490,11 @@ public class Jalview
       }
       if (aparser.contains("help") || aparser.contains("h"))
       {
+        /*
+         * Now using new usage statement.
         showUsage();
+        */
+        System.out.println(Arg.usage());
         Jalview.exit(null, 0);
       }