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JAL-3127 pass reference to AlignViewportI when creating an instance of ColourSchemeI
[jalview.git] / src / jalview / bin / Jalview.java
diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 3270144..88b359f 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -541,7 +541,8 @@ public class Jalview
           data.replaceAll("%20", " ");
 
           ColourSchemeI cs = ColourSchemeProperty
-                  .getColourScheme(af.getViewport().getAlignment(), data);
+                  .getColourScheme(af.getViewport(),
+                          af.getViewport().getAlignment(), data);
 
           if (cs != null)
           {