Jalview-JS/JAL-3253 applet params jpredfile, jnetfile

[jalview.git] / src / jalview / bin / JalviewAppLoader.java

diff --git a/src/jalview/bin/JalviewAppLoader.java b/src/jalview/bin/JalviewAppLoader.java
index 194d619..4ac4ffd 100644 (file)
--- a/src/jalview/bin/JalviewAppLoader.java
+++ b/src/jalview/bin/JalviewAppLoader.java
@@ -260,7 +260,7 @@ public class JalviewAppLoader
                 app.getViewport().getAlignment(), 0, false);
         // false == do not add sequence profile from concise output
         app.getViewport().getAlignment().setupJPredAlignment();
-        app.updateForLoader();
+        app.updateForAnnotations();
         result = true;
       } catch (Exception ex)
       {
@@ -290,7 +290,7 @@ public class JalviewAppLoader
       if (new AnnotationFile().annotateAlignmentView(app.getViewport(),
               param, protocol))
       {
-        app.updateForLoader();
+        app.updateForAnnotations();
         result = true;
       }
       else